GgaINT1011794 @ galGal4
Intron Retention
Gene
ENSGALG00000004485 | DOLPP1
Description
dolichyldiphosphatase 1 [Source:RefSeq peptide;Acc:NP_001025860]
Coordinates
chr17:5485931-5486368:+
Coord C1 exon
chr17:5485931-5486015
Coord A exon
chr17:5486016-5486268
Coord C2 exon
chr17:5486269-5486368
Length
253 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CTTTCTTCTTCTCTTCCCAGAAG
3' ss Score
10.7
Exon sequences
Seq C1 exon
ATCTCTTTCTTGGGAGGGCTGGCTTTCAACGAGGGAGTGAACTGGTTAATAAAAAATGTTATCCGGGAGCCACGGCCCTGTGAAG
Seq A exon
GTACGGTACGGCCCATTGGTGTCATGGCATTGGTTGACCTTGAGTGGAATGATAACTGTGGGGTGTCAGAAGGTGCTTTCCCGTTTGCCTCGTGTTGGCTTTGGATGTCTGGGTGTAAGAAGGCTGGCAGAGATGTGTCCTGTGAACCTGTGTGCGCAGACACCAGTGGAGTCGTTTGGCTTTACCTTTGGAGTGTTCCTGTTGCCGTGTACAGAGCAGACCTTGACCATACTCTTTCTTCTTCTCTTCCCAG
Seq C2 exon
AAGCCCATTCAACAGTGACCACAAAATATGGGATGCCGTCCAGCCACTCCCAGTTCATGTGGTTTTTCTCTGTCTATTCATTTCTGTTCCTTTATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004485:ENSGALT00000007143:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(21.5=100)
A:
NA
C2:
PF0156916=PAP2=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTTCTTGGGAGGGCTGG
R:
AGGAACAGAAATGAATAGACAGAGA
Band lengths:
175-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]