BtaINT0052387 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015330 | DPP4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MU57]
Coordinates
chr2:34509369-34509955:+
Coord C1 exon
chr2:34509369-34509464
Coord A exon
chr2:34509465-34509863
Coord C2 exon
chr2:34509864-34509955
Length
399 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGGTCATTTTCTCTCTTTAGATC
3' ss Score
10.65
Exon sequences
Seq C1 exon
ATGATGCTTCAACTGATAGTCGCAGAACCTACACTCTAGCCGATTATTTAAAAAATACTTTTAGAATGAAATTCTACAACTTGAGATGGGTTTCAG
Seq A exon
GTAAGGCTTTCTGGTGGAAAGAGGGGCGGATTTTTATGCTTATTTTCATTTTATGCTTACGTTAGGTTGTGGGGCACCTTCATGGTAATAAGAATATATTCTTGTTTTTTAAAACCATATGGGAAAGTATTATTTTCTACTAAAGGGTGCAAAAGGAGATAAGACAGAAAGAAACCTTAGTATTTCTTTGACATGTACTATAAAAAATTAAAAGTGAATTGAACCCTTTACAATGATGATGGGAAAATGAAGGCATATTAGTGTAATACTTATCAGTTCATGTTTTTCCAACTTAGAATTTATATGAATTTAAATCTTACATTTTTTGCATGATTTTTTAGTTTATGAAGATGTTTAATAGCAACTTGAAATATTGATCTGGTCATTTTCTCTCTTTAG
Seq C2 exon
ATCATGAATATCTCTACAAACAAGAAAATAATATCTTGCTATTCAATGCTGAATATGGAAACAGCTCCATTTTCTTGGAGAACAGTACATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015330:ENSBTAT00000056886:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCAACTGATAGTCGCAGA
R:
ATGTACTGTTCTCCAAGAAAATGG
Band lengths:
182-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]