RnoINT0050838 @ rn6
Intron Retention
Gene
ENSRNOG00000030763 | Dpp4
Description
dipeptidylpeptidase 4 [Source:RGD Symbol;Acc:2515]
Coordinates
chr3:48346574-48347285:-
Coord C1 exon
chr3:48347190-48347285
Coord A exon
chr3:48346666-48347189
Coord C2 exon
chr3:48346574-48346665
Length
524 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GGCCGTTTTTCTCTCTTTAGATT
3' ss Score
10.59
Exon sequences
Seq C1 exon
ATGAAGCGGCCGCTGATAGCCGCAGAACTTACACACTAGCTGACTATTTAAAGAATACCTTTCGGGTCAAGTCCTACTCCTTGCGGTGGGTTTCAG
Seq A exon
GTAAGACTTGGGCCTCCCGGGATGGGAATATTATGTTTGTGTTCATTCTAGAGAGCTTGAAGTAGCAAGGGCTTTGGTCAATGAGACGGTACAATCCTTTTTATAAAAACAACAAAAACGAAAGCAAAAATTCTGTGCAATATTCGTTCTTGCTACGAAGTGTAAAAGGGGGCCTGGTGGTGGTACACACCTTTAACCCCAGCACTAGGAGGCAGAGGTAAGCAGATCTCTGAGTTCCAGGCCACACAGAGAAACCCTGTCCTAGGGAATGGGTGGGGAGTGTAAAGGAGGAGACGGGAGGAAGCTCAAGTGTTTCTTTGCTATATACTGTAAAGAGTTAAATGTGAATTGGTAGTTTGGCATTGACGATGGCATATAGACGGGTTTAGTACCATGTTCTTTGCTTCTGTTGGCACACGGTATCTTTGTGTGCCCTGAGCGAACTTCATTTTTAAAGAAAATTAGCTTATGCGCGTGTTTGATAGCAACTTGTCGTACTGACCTGGCCGTTTTTCTCTCTTTAG
Seq C2 exon
ATTCTGAATACCTCTACAAGCAAGAAAACAATATCTTGCTATTCAATGCTGAACACGGGAACAGCTCCATTTTCTTGGAGAACAGTACCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030763:ENSRNOT00000040482:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]