HsaINT0051790 @ hg19
Intron Retention
Gene
ENSG00000197635 | DPP4
Description
dipeptidyl-peptidase 4 [Source:HGNC Symbol;Acc:3009]
Coordinates
chr2:162903425-162904011:-
Coord C1 exon
chr2:162903913-162904011
Coord A exon
chr2:162903517-162903912
Coord C2 exon
chr2:162903425-162903516
Length
396 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGGGTGTTTTCTCTCTTTAGATC
3' ss Score
11.23
Exon sequences
Seq C1 exon
CAGATGATGCTACAGCTGACAGTCGCAAAACTTACACTCTAACTGATTACTTAAAAAATACTTATAGACTGAAGTTATACTCCTTAAGATGGATTTCAG
Seq A exon
GTAAGAATTTTTTGGGGTAGGGCAGATTTTATGCTTACATTCATTCTAGTTAAGTCGAGATGTGGGCTTTTATGGCACTGAGAAGAGGTAATCCTTGTTTTTAAAAATTCTATAGAGAGTTTTTTTTTTCTTTTTCTACTTGAAGTGCAAAGGGAGAAAGACTGAAAGGAACCCAAGTATTTCTTTGACATGTATAATAAAAAATTAAATGTGAATTGAAACCTTGACAATAATGATGAAAAAATGAATGAATGTTAGTATAATATCATTCATGTTTTCTCAACTTAGAAATGCCTATTTGGTATTTGTGAGCTTAAACTGTATTCTGTAATTTTCAGCTTATGAAGATGTTTAATAACAACTTGAAATTTTGATCTGGGTGTTTTCTCTCTTTAG
Seq C2 exon
ATCATGAATATCTCTACAAACAAGAAAATAATATCTTGGTATTCAATGCTGAATATGGAAACAGCTCAGTTTTCTTGGAGAACAGTACATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197635-DPP4:NM_001935:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATGCTACAGCTGACAGT
R:
AAATGTACTGTTCTCCAAGAAAACTG
Band lengths:
190-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)