MmuINT0052928 @ mm9
Intron Retention
Gene
ENSMUSG00000035000 | Dpp4
Description
dipeptidylpeptidase 4 [Source:MGI Symbol;Acc:MGI:94919]
Coordinates
chr2:62224488-62225217:-
Coord C1 exon
chr2:62225122-62225217
Coord A exon
chr2:62224580-62225121
Coord C2 exon
chr2:62224488-62224579
Length
542 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGGCCATTTTCTCTCTTTAGACT
3' ss Score
9.38
Exon sequences
Seq C1 exon
ATGAAGCGGCAGCTGACAGCCGCAGAACGTATTCACTAGCTGACTATTTAAAGAGTACCTTTCGGGTCAAGTCCTACTCTTTGTGGTGGGTTTCAG
Seq A exon
GTAAGTCTCGTGTCTCATTGGATGGGAATGTCAGGTTCGCATTCATTCTAGAGGGCTTTGGTTGCAAGGGTTTTGGTCAGTGAGAACATACGATCTTTCCTTTGAAACTCTGTGCAGTATTTTTTCTTGCTTAGAAGTACAAAAGGGAGCCTGGTGGTGGTGGTGGTGCACACCTTTAATCCCAGCATTAGGAAGCAGAGGCAGGCAGATCTCTGACTTTCAGGCCAGTCTGGTCTAGAGAATGAGGCCTGGGATAGCCAGGGCTACACAGAGAAACCCTGTCTTGGGTGATGGGGAGGAAAGTGTAAAGGAGAAGATAGGAGGAAACTGAAGGGTTTCTTTGCTATATTCTATAAAGAGTTAACTGTGTGTTGGAAGGTTGGCATTAATGATGGGCCTAGTATGGGTTTAGTACAAAGTTCTTTGTTTCTGTTGGCACCCAGCATGTTTATGTGCCCTGTGTGAACGATTTTTTTTTAATTAGCTTACACATGTGTTTGATAGCAATCTGTCGTACTGATCTGGCCATTTTCTCTCTTTAG
Seq C2 exon
ACTTTGAATACCTCTACAAACAAGAGAACAATATCTTGCTGCTCAATGCTGAACATGGAAACAGCTCCATTTTCTTGGAGAACAGTACCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035000-Dpp4:NM_010074:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: