GgaINT0048334 @ galGal3
Intron Retention
Gene
ENSGALG00000011110 | DPP4
Description
NA
Coordinates
chr7:22720557-22721165:+
Coord C1 exon
chr7:22720557-22720655
Coord A exon
chr7:22720656-22721070
Coord C2 exon
chr7:22721071-22721165
Length
415 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TTTCTCTCTTGCTCTTTTAGGAA
3' ss Score
13.87
Exon sequences
Seq C1 exon
AAAGTATCCCCGAGTCTGATTCACGAAGTACATATACCCTGGAGAATTACTTGAACAATGACTATGTGTACAAAACACACAATTTGCAATGGATTTCAG
Seq A exon
GTAATTTATTTTTACATACAGCATGCATATAAAGCAAATGCACTACTAGAAATACACAGTACTCAGAGATGACTAATATATCCTGAAAATATATCAGATAATTAAATAGCATTATTACAAAAGGGTACATAGCTCAAACAGTTGTGATTTCTTTTCTGTAGATATGTTAGTGCTTGTGGCAAACTATGTTCTCCTACTGCTAGAAGTACCCCAAGAGAAAAAGGTGCCAGAAGGTTGAAGCTGTGAGCCCAATTTTGTTAACAGTGCTATAAGCATCCTTTAATTACAAAAGCTGGAAACAGAATATTGACCAAAATTTTTAATTTTATTTCCTGCTTCAAGAAATAGGGGAGAAAGAAGTGAGTGATGTGCATTTTATTTACTGTTTATTGGCATTTCTCTCTTGCTCTTTTAG
Seq C2 exon
GAAATCAATATCTTCATGAAACATCTAATGGAAACATTCTACGTTTTGATGCTGAAACTGGAACATCCTCAGTAGTCTTGTTAAATACAACAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110:ENSGALT00000018100:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTATCCCCGAGTCTGATTCAC
R:
TAACAAGACTACTGAGGATGTTCCA
Band lengths:
182-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]