BtaINT0052392 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015330 | DPP4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MU57]
Coordinates
chr2:34569989-34571758:+
Coord C1 exon
chr2:34569989-34570062
Coord A exon
chr2:34570063-34571656
Coord C2 exon
chr2:34571657-34571758
Length
1594 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TCTCTCTTTTGTCTCTCCAGTGG
3' ss Score
10.59
Exon sequences
Seq C1 exon
ATAACGTGCACTTTCAGCAGTCAGCTCAGATCTCCAAAGCCCTGGTGGATGCTGGAGTGGATTTCCAGTCAATG
Seq A exon
GTATGTAGCAAAGCTTCCTGCAAGGGGAAGGAACTTCCTGGTGGGGTCTGGTTCCCCTCTCACGATTACTTCTCTCATCAAGGTCCCAGGAGAAAGGGACAAAAGCAAAAAAGAGTCTTATTTTTCTAGTAAGAAGTTGAAGAAGTGATATACTTGAGCCAGAAACACAGTCATGTTCAATATCAGTTAGGGGTTGAAAAGCACAATATTGCGTATCTTGTGAGCATCAGATCCCTAGTCTTGTGATTGCTCTTCTAGCCCTATGATTGTCCCATCTCTCCCTAATTTGACTCAAAAGTAATCACTTACCCAGTGAAAAGTATGGCAAAGTAATTCTAAAGTGAAAGCAGCATGATAATCGCACAGCTCAAATATGAAAATCCATCTCTAGTACGTGTTCCTAGCCCTTCTAACAAAGGTGGGGTATAATAATCAGCAAGTTTCAGTTTCTGCAGCTTCCATGTTATCTTTTGTTGAGCAACTACAGGTAATAAACAATTAGGCTGGGTTTATAAAGTCAGAAATGGCTAGAGAGTTGTTGCCTGTTCAGAGGATGTTTCTAGGTACTAAGCAAAATTCATTTTATGCACTATTTTCAGATTAAGAGAAAAAAAAAGATTTTATGTGTGTGTTGCACTAAATATATTTGTGTTAAGAGCTTTCTTGTCTGTATTAGCTTTAATAGCCTGCTTTCCCTCGCTCTCTTTTAACATACACACTTTGCTCTGTGCTCAGTTCAAGCAGTACCTACTGTATTTAAAAGCGGGACAGTCATTTGATACCAGAAAACATGGCATATATTTTCGAGGTTAGATTCTTATGAGGTTATGGTATAAAGACATGATACTTTAAGCAATTTTTGAAAGTTAATTTATGTCTCCATGATATATGTTTTCCTGGCAGTGACTTCCCACTTGTTTAACATGGTGGTATGAGTTGATAAATTTTTGCCTCAGGTCATCAACTCTTCCTAAATACATGTCAGACATACAGATAAGAAATTCCAGTGAAAAATCTTACGTGTTTGAAAAGAATACATTTGATTTTTGACTTCACTTATGCTAAACATATATATGGAATATGGAAGTAGATTTTTCTAGTTCCTTAGTAATATACATTAGGAAAAATTGCTTTTTAAAAACATTTAATAGTTTTTTTTTACTGCAGTGGAGGAGAAACTTAACAGGTGATAGCACTTAATTAAAGTGGGCTTTATGGGAAAACATTCCATCCTATGCATGATGAATTTCTAAGTGTCCTTTGAGTCAAATTTGAAAATGGACTTAGATATTTTCATGTAATACACATATCCTTAAAGCAGTGTCCAGTGAAGTCAAACTCATGGTGAGTTGTCTCAGCACTTAGCAGGGACAATCGGAGACTCCTGCAAGACAGAGCCTACATGTCTTGGAAAAGCTCTGGGTGGGGGGAGAGGGGGATAAGAAAACCTGTTTGATCATGTTTCAGTTTACAAACTGATTGAGGAGTTAAAACATGTGTGTTATGCCATGTATGCTCATGAGAACTCATTTGGATTAAAAAAAAAAAGGGCAACTGACTTCCTAATTCTGACCTCTCTCTTTTGTCTCTCCAG
Seq C2 exon
TGGTATACAGATGAAGACCACGGGATCGCCAGCAGCACAGCACACCAACACATATACACCCACATGAGCCACTTCCTAAAACAATGCTTCTCTCTACTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015330:ENSBTAT00000056886:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(11.6=100)
A:
NA
C2:
PF0032616=Peptidase_S9=PD(15.0=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]