HsaINT0051789 @ hg38
Intron Retention
Gene
ENSG00000197635 | DPP4
Description
dipeptidyl peptidase 4 [Source:HGNC Symbol;Acc:HGNC:3009]
Coordinates
chr2:161992241-161995034:-
Coord C1 exon
chr2:161994961-161995034
Coord A exon
chr2:161993385-161994960
Coord C2 exon
chr2:161992241-161993384
Length
1576 bp
Sequences
Splice sites
5' ss Seq
ATGGTATAG
5' ss Score
2.86
3' ss Seq
TCTTTTCTTTCTCTCTCTAGTGG
3' ss Score
11.25
Exon sequences
Seq C1 exon
ATAACGTTCACTTTCAGCAGTCAGCTCAGATCTCCAAAGCCCTGGTCGATGTTGGAGTGGATTTCCAGGCAATG
Seq A exon
GTATAGAAAAACTTTGTGCAAGGGGAGGGAAGTTGCTGGTGGGGTCTAGTTTCCTCTTTCTGGGCTAATTCTTTTAGCAGTGCCACAGACAGGACAGAATAAAAACATTAAAAATTTTTTTTTCAACGTGAAGTCAGAAGAGTGGTATCCTTCAGCCATGCACAGAGTAATGCTCAATAATATTAGCGAGTTTGGGGTTAAGAAGCACAATATCGCATATGCTGGGAGTATCAAGACACTGCTCTCCTGTTCATGTGATTGTTCAGTCTCTCCCTATTTTGATTCAAAAGTAATCACTTGTTCAGTAAATGTGTGGCAGAGTAATTCTAAAGTGAAACCAGCATGATAATAGCTCAGCTCAAATATGAAAATCCATTTCTGTCTGGTATGTATTACTAGCTATTCTAACAACAGTGGGATCTTAATAATCAGCATGCTTCAGTTTTTGCAATTACAAGGTGATCTTTTGTTGAATAACCACAGGCGATAAACAATTAGGATTGTTTTATAAAGTCAGGAATGGCTAGAGCTGTTGTTGTCTATGCAGAGGATATTTCTACGTATTATGTCAAATTCATTTTCTGCATTAGAGATTTTCAGATGAAGGAAAACGTATTTTTAATGTGTGCATGTATGTATATGTATTTATGTGTCCTCTAACACACATGATTTGCTCTGTGCTCAGTTCAAATGGTGCCCAATGCACAGGAGTGGGACAGTTACTTGATACTGAGAAAAACTGGCTATCTTTTGGGTCAGTGTTTTATAAGAGGTTGAAGTTTATTTTTCTACTATTCAAAGAAAAGACAAATGCTACTTTAATTAAGCTTTTTTTAAAGTTAACTTATGTCTCCATAATTTATGTTTGCCCGGTAATGACTTCCCAATTATTTAACAAGGTATGAATCAATAAATTTTTGTCCCAGATCATTAATTCCTTTTACATAAATGTCAAATACACAGATTTCTTAAAATACCAGTTTAAAATCTAAGTGTTTACAAATAATACATCTGATTTTTGACTTCACTTCTATTAAACATATATATGTAATATTGAAATAGAGTTTTTCCAGTTTCTAGGTGCTATATATTAGGCAATATTGCTTTAAAAAAAATCATTTAGTTTAATACAGTTTATCTTACTAGAGTACAGAGAAATTTAACACTTGATAACAGTTTAATTAAAACAAGTGGGCTTAATGGGATAATCATTCCTTCCCATGCATGCTGTGTAAGCGCCCTTTGAGTCAAATTTGGAAATGGATTGGGTGTTTTAATTAAAATGTACGTATCTTTAAAGCACTATTCAATAAAGCCAAATTCACAGTGAGTTCTCTCAGCACCTGCAAAAGAGGATCAGAGACTTCTGCAGGACAGAACAACGTGCCCTGGAAAAGCTCTGGGGGAAAATTAGACCCCCTCTTTGACCCCGTTTCAGTTTATAAACTGCCTCAGGAATTAAAACACTCTGTTTTATACCATGTATGCTCGTGAGAGCTCATTTGAATTTACGTATTTTTTTTTTTAAGAAGAGTACTGACTTCCTAATTCTAACTTCTTTTCTTTCTCTCTCTAG
Seq C2 exon
TGGTATACTGATGAAGACCATGGAATAGCTAGCAGCACAGCACACCAACATATATATACCCACATGAGCCACTTCATAAAACAATGTTTCTCTTTACCTTAGCACCTCAAAATACCATGCCATTTAAAGCTTATTAAAACTCATTTTTGTTTTCATTATCTCAAAACTGCACTGTCAAGATGATGATGATCTTTAAAATACACACTCAAATCAAGAAACTTAAGGTTACCTTTGTTCCCAAATTTCATACCTATCATCTTAAGTAGGGACTTCTGTCTTCACAACAGATTATTACCTTACAGAAGTTTGAATTATCCGGTCGGGTTTTATTGTTTAAAATCATTTCTGCATCAGCTGCTGAAACAACAAATAGGAATTGTTTTTATGGAGGCTTTGCATAGATTCCCTGAGCAGGATTTTAATCTTTTTCTAACTGGACTGGTTCAAATGTTGTTCTCTTCTTTAAAGGGATGGCAAGATGTGGGCAGTGATGTCACTAGGGCAGGGACAGGATAAGAGGGATTAGGGAGAGAAGATAGCAGGGCATGGCTGGGAACCCAAGTCCAAGCATACCAACACGAGCAGGCTACTGTCAGCTCCCCTCGGAGAAGAGCTGTTCACAGCCAGACTGGCACAGTTTTCTGAGAAAGACTATTCAAACAGTCTCAGGAAATCAAATATGCAAAGCACTGACTTCTAAGTAAAACCACAGCAGTTGAAAAGACTCCAAAGAAATGTAAGGGAAACTGCCAGCAACGCAGGCCCCCAGGTGCCAGTTATGGCTATAGGTGCTACAAAAACACAGCAAGGGTGATGGGAAAGCATTGTAAATGTGCTTTTAAAAAAAAATACTGATGTTCCTAGTGAAAGAGGCAGCTTGAAACTGAGATGTGAACACATCAGCTTGCCCTGTTAAAAGATGAAAATATTTGTATCACAAATCTTAACTTGAAGGAGTCCTTGCATCAATTTTTCTTATTTCATTTCTTTGAGTGTCTTAATTAAAAGAATATTTTAACTTCCTTGGACTCATTTTAAAAAATGGAACATAAAATACAATGTTATGTATTATTATTCCCATTCTACATACTATGGAATTTCTCCCAGTCATTTAATAAATGTGCCTTCATTTTTTCAGAAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197635:ENST00000360534:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(11.6=100)
A:
NA
C2:
PF0032616=Peptidase_S9=PD(15.0=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCGATGTTGGAGTGGAT
R:
ACCCGACCGGATAATTCAAACT
Band lengths:
358-1934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development