GgaINT0048356 @ galGal4
Intron Retention
Gene
ENSGALG00000011110 | DPP4
Description
dipeptidyl peptidase 4 [Source:RefSeq peptide;Acc:NP_001026426]
Coordinates
chr7:20674262-20676092:+
Coord C1 exon
chr7:20674262-20674335
Coord A exon
chr7:20674336-20675152
Coord C2 exon
chr7:20675153-20676092
Length
817 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGG
5' ss Score
6.63
3' ss Seq
CTGTATTTTCTTTCCTGCAGTGG
3' ss Score
10.18
Exon sequences
Seq C1 exon
ATAATGTTCACTTTCAGCAAGCAGCTCAGATTTCCAAAGCTCTTGTTGATGCTGAAGTGGATTTTCAGGCAATG
Seq A exon
GTATGGTTGTGTTGTATTTATTTTCATATGAATAGACTTGTATTATGAGAATGATAGCAATAGCTCCCCCTAGTTAGGTAGAAAACAGCTCCCAACTTAAAACAAAGCTTACGTATTTGTATTTCATGTTCAGTAATTTAAATCATAACATTAACTCTCCATATATCTACTATACAAGAACAAAAACTAATGTAGTTTCTTCTGGTATTTGATCATTCATTTTATTTTTCTGTATTCTCAAAACAGCGAAGCCAGTCCTAGTCTTAGAAATAGCTCACTCAATAGTATACTTTCTATATAAGGAAAAGTAAACTTCAGCTAAGTCCATTTCTTTACCCAAGATAAACTTTTGGAGTCCCTGTTGGACTTGTAAGACAGAGCAGTTATTTGCCCAGTCTTACACTGTGCATGGAAATTCCCAGATTAAGGTAGCTGTGCTTCCTTTCCTACTTGTTCCCAGCCCTTGAGGAACAGTGGATAAATGAAATTGAATGAAGCCAAGCGCACTGTATGGTCTGTCCTTCAGCAGGGATAACAGTGTGGTGAGAAGGGACACTATACTGAACCAAGAAGCTGCATCTAGCTTACATTACATGTAATGTACTTTTTTTGTACTTCTAGCGTAAATAGCTGGTGTATTTCCTACACAGAAAGCAGGAAGTTGCAGGGATTTCTGTCCCTGCTATGATTGTCTTTGACTGCTGACTTAGCCTCATGTTGGATGGCTGAATTTTTTTTATCTGCTTTTATGTCTACAGTTTGATTTATGACTTGTACATAGCTAGAGGTAACAGTCTCTGTATTTTCTTTCCTGCAG
Seq C2 exon
TGGTATACTGACAAAGACCATGGCATCAGCGGTCAAGCACATAAACACATTTATACCCATATGAGCCATTTCATAAAGCAGTGTTTCTCACTGCCCTAACACAGCAATGGCACTGCCCTTTTACTTGTTAGTGATGGTTTTTCTCCAGAAAACTCCTTAGCTAACGTACACTGAGCCAGTATAAACTTTTAAGAATTAAGATGGCATAGGGGAGTCAGCTCTTAGGATATCTGAATGAGTGTACAATGAAGCACTAATCTTAATAATGATCTGTTACCTCTGTTGCCAAGCAACCATCACATTTTTGATTGTTTAATCAGGTTATTAACATCACCAGAACGTATGTATGTATGTAGGTTGCAGACTTCTAGAAAGCACAGTACTTGAACCAGGAACTTATGCTTTCAGATTTCAATCTTAAAAAAAAAAAAAAAAAAAAACGCCAGATTTGCTACTGATGTAATGAATACTGAAAATAACAAAGAACTGTCATGATAATCATAATGTTCCCTCCCCCCACATGATTATCTCTATTAAAATATTGATAAAACTTTGAACAGATTTTGCTGAAATTACCTAATGCTTGATCAGTGATTATTTTAGAAATATCAGTAATACTGCAACATTAATAATTTATATGCAGAATAAAACAGTTTACTTCAGTTCCTTGAGTTATTATTTAACTGCAAACTCTTGGATTACAGTTGCAGAACCTTGCATAGAATGCATGCAACCATTCTCTTTTACCAGAGATTTTGAATGACACTTAAACCAGTGGCACTGAACTTGTTTCCTATCTATCTCCATACTGTGCTATTTACTTACTTCATAGGCAAAAAGGTTTCTCCTGTGGAAACCTGCACTGGTACTGTAGCAGATCATAGATGTTTCTCTATGGGACAGAAATCTTTATTAAAAATAAATAAATAAATAAAATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110:ENSGALT00000018100:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(11.5=100)
A:
NA
C2:
PF0032616=Peptidase_S9=PD(14.4=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCTCAGATTTCCAAAGCT
R:
AATGTGATGGTTGCTTGGCAA
Band lengths:
358-1175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]