MmuINT1009065 @ mm10
Intron Retention
Gene
ENSMUSG00000035000 | Dpp4
Description
dipeptidylpeptidase 4 [Source:MGI Symbol;Acc:MGI:94919]
Coordinates
chr2:62330073-62334329:-
Coord C1 exon
chr2:62334256-62334329
Coord A exon
chr2:62332720-62334255
Coord C2 exon
chr2:62330073-62332719
Length
1536 bp
Sequences
Splice sites
5' ss Seq
ATGGTATAC
5' ss Score
2.73
3' ss Seq
AGCGCTCTCTCTCTCTGCAGTGG
3' ss Score
10.7
Exon sequences
Seq C1 exon
ATAATGTTCACTTTCAGCAGTCAGCTCAGATCTCCAAAGCCCTGGTGGATGCTGGTGTGGATTTCCAAGCAATG
Seq A exon
GTATACTAAGACTTTGTTCAGGGGGAACAAAATATCTAGTGGGTCTAGTTTCCCCTTTGGCAGTTACTTTTTCCCAAGGAAGTCTCAGATGACAGGAAGAGAAGAGAGGCCCCTTATCATTCCGCTGTGAAGTTGGAGACGTGCTATCCTTGAGTCATACACAGAGTAAATATTAGACAGTTTGAGGTTGAGAAACACAGTATTACATATCCTGGGAGTGTCAAAACACCATTCTTCTATTCCTGTGATGGTTCAGTCTCTCCCTGTTTTGATTCGAAAGTAATCACTTATTCTGTAAATGTGTGGCAGAGTAATTCTAAAGTGAAACCAGCATGATAATAGCTGAAATGTAAAATCCATTCTGTTATTATGATTACTAGCCATCCTAACAACAGTGGGGTATTAATAGTTAGCATGCTTCAGCTCTTGCAGTCGCTACATTATCTTTTGTTGAACAACTGCAGGCAGCAAACAATTAGGCTTGTTTATAAAGTCAGAAATGGCTGGGGCTGGGTTTGCCTGTATAGAGGAGGTTTTGGGTATTTAGTCTAACTCATCTTCTTCATTAGAATTCTTCATCAGACTTTATACATACATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGCATCTTGCACTAATAATACAATGCTATAAAACAACACAACTTTCTTAACTGTTTTGGCTAGAAAATAGTGTCCCTCCACTTCTGACACATAATTAGCTGTGTGCTCCGCTTCAATAGTGCCCACCTATGTAAGAGTGGATTTTTTATTTTGTACTGAGAAAACCTGCCATATATTTTGGACCAGATTCTCAGAAGAAGTTGAGGTTTGTTTTTTCCATGTTTAAAGCAAAGTTATATAATACTTGAGGCATGATTAAAATTAACTTATGTCTCAGGAATATGTACCTGCCTGACATAAATGTCAGATATACAGAGTTCTTAATTTCCAGTGTAAAATTTAAATGTTGGTAAATAAAACATTTGTCTTTTGGCTTCACTTATGTTACAGATATAAGACTTTAATATTAAAATTGATTTTTCCAGCCATTAGATGCTTATATTAGAAAATTGTCCTTAAAATCTATTTATTTTAATACATACTCAAGTGTAGAGAGATTTGGCCCTTGCTGGCACCTATTAAAATAGTATGCCTGCTGGTATAAACCTTCCCATTCAGAGTGTAGTTTTTAAGTGACCTTTGAGTCACATTTAAAGGTTGACTTGGGTATTTTAATTAGAATATACCCATGTTTAAAGTCTTCTGCGGTAAACACAAATGCATAGTGGATTTTCTCAGCACCCCCCAAAAAAGAGGACCAGTGATTTCTTCAGGACGGAACATGTCTTGAACAGCTCTGGTGGAGAACTAGACGCCCTCTCTGATCACACTTAGGCTTATAAACCATTCCCGTTGTTTTTACACCGTGCAAGAGCTCATTTGAATTTTCCCTTCTAAAGACCGAGGACCTCCTAATCCTGAGCGCTCTCTCTCTCTGCAG
Seq C2 exon
TGGTACACGGATGAAGACCACGGGATCGCTAGCAGCACAGCTCACCAGCACATCTATTCCCACATGAGCCATTTCCTCCAGCAGTGCTTCTCCTTACACTAGCACAGCATAGCTCTCCATAGCTTATTTAAGACCACATTTGTTCTCATTATCTCAAAAGTGCACTGTTAAGATGAAGATCTTAATAATGTTGCATTGAGACATTTCAGGCTGCTTTCTCCAGTTTTACACCTGCAATCCTAACTAAGGATGCCTGTCCCCAGAACAGATTACTACCTTAGAGCAATTTGGATTTTCCCCTCTGTTTTGTTTATCATTTAAAATCATTTCCACATCAGCTGCTGAAACAACAAATATAAATTATTTTTGCAAGAGCTATGCATAGATTTCCTGAGCAGAATTTCAATTTTTTTTTTCCTTACTAGACTGGTCCAAATCTCGTTTCCCTTATTTAAGTGGGTGACAAGATGTGGGTAATGATGTCATTAGGGCAGCAACAAGAGAAGAGGGAGCAGGGAGTATGGCTAGAAACCCAGGTCCAAGCATACAAACCAACCAGGCTACTGTCAGCTCGCCTCGAGAAGAGCTGTTCACTGCCAGACTGGCACAGTTTTCTGAGAAAGACTATTCAAACAGTCTCAGGAAATCATATATGCAAAGCACTGACTTCTAAGTAAAACCACAGCAGTTGAATAGACTCCAAAGAAATGCAAGGGACGCTGCCAGCAATGTAAGGGCCCCAGGTGCCAGTTATGGCTATAGGTGCTACAAAAACACAGCAAGGGTGATGGGAAAGCATTGTAAATGTGCTTTTGAAAATTACCGATGTCTCCTAGTGAAAAGAGGCAGCTTGGAACATATCGACTTGCCCTGTTAAAAGTTGAAAATATTTGTGTCACAAATTCTAACATGAAGGAATACTTGCATTAGTTTTTCCTACTTCATTTCTTTGAGCATTTTAATTAAAATATTTTAACTTCATTAGCTTTTTAATGGAAAATTAAATGAGAATGTTTTGTGTTATTATTTCTATTCTACACACTGGAACTTTGCCTGGTCATTTAGTAAATATGCTTCCATTTTTCAGAGGTAATGGGTTATGTCTTGAATCAAACTTACACCGCATTGACATATGGACACATTTGTTCAAAGGTTCTTGTTTAACTTGTTAGACATCCAAGACTGTCTTGTAAACATGGAAAGAGTTCAGCTTTTTTTTAAAAAAAATTAGATACATAAAACTGTTTAAACTTAAATGATTCATAGGGGTTTCTCTAATACCCCCTGAAATGTCTATTTTCACACTTATCACATAGCTTTGGAGAAATCAATTAACAATAATTTGGTCATTTAAATACTATGGAATTCATAATATAATTTAATCTAGGGGAGCATGTGAGGCTCACAGCATGGGACAGAACACTATCAGCAGAGTCGTTTTGGTTGACTTGTCTTTCCAGGGTTTTCTGTATTGTTTTGTCTCTGGTCTCTTCTTGTGGGGGGGTGATATAATAGAAAACATACATTCTGATATTGAACTTGACTTAGCAATGTTTGGATAACTTAGAAAATACTACGTTTTGTTTCAATTATTTATAACACAACTGCATTTTTAAAATGGACTTCACACATTTAAATGCAGTTTCAGACCAGAGTGCTAGATAAAATTATTCTGGACAGGTGAGCCACAGCATGAATTGCAAACGTGGCAGAAATGGAAACTACCTATCAAATAAGGGTGGGATTAGATATTCATGAGCTTGATGCCACTTCCCAGGCCCCCCCACGGATTCACTCCACCTTAAGTAAGTCTCAAGTCCTATTCTTCCATTGCAAGCACTGCTGGTAAGTAAGCCTGTAGGTTTCTGGCTATAATCCTATTTTAGAATACAGCACTTTCACCATGTGCAGCAGTATCCACCTGCAAAGTTCTAGATCAAGGGACAGAGGTGACATGTTCCTGTCAGTGTGAAAACATAAACAGAAATTACCCGTTGTGAATTCATCAATCTAAACCCCATTATATAATAATCTAGATTTTATTAATATATCTTATATGATGTATCACATAATATTTATATAATAGCCAAACCATGAATTTTGTGTTCCTTTTGTTTCTAAATATGTTGTTTCTGGAGCCTGAATTAATCAAATATCACAGCACACATTTTTCAGGCAATGATGGTTTCAAATGGTGATAATGTGAATAAATTCAGTTTTTATTTGACTCTCATAGCACAAGTTTTACTGTTCCGTAAGAGTTGTGAATTAGATTAAGAACCTGATGCGGAAGTTCTAAGTGAACTCAAGAGTAAGTTTGAAAAGCACAAGAGCTAGTAACGTCACTAAGGGACATAGACCTGTCTCTGAGGGACATATGCATTCTCTGGAAGCACATGGATCGAGCTTCCTTCTCAGAGCACACCAGCATCAGGGGCGCATGCGCTAAGGGAAGGCCGCCCTGACGCTTCACTATCCAGGATCACTTCAGTCTGTGCCATTCCGGGCACTGTGGTTCTCGGAGTATTAGCAGTTCCACCTCTTGGCGCTTATTGCTCTTGCTCTAAGTTGGAGTGAGAATGCCGGTTTATAAAATTACTAGATTTGTACAATATTTAAGATTCAATAAATTCTAAGTGAAAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035000:ENSMUST00000047812:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(11.4=100)
A:
NA
C2:
PF0032616=Peptidase_S9=PD(15.2=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAGATCTCCAAAGCCCT
R:
ACAGAGGGGAAAATCCAAATTGCT
Band lengths:
357-1893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types