RnoINT0050836 @ rn6
Intron Retention
Gene
ENSRNOG00000030763 | Dpp4
Description
dipeptidylpeptidase 4 [Source:RGD Symbol;Acc:2515]
Coordinates
chr3:48293678-48295290:-
Coord C1 exon
chr3:48295217-48295290
Coord A exon
chr3:48293723-48295216
Coord C2 exon
chr3:48293678-48293722
Length
1494 bp
Sequences
Splice sites
5' ss Seq
ATGGTACAC
5' ss Score
3.23
3' ss Seq
CCTCATTCTCTCCTCTCCAGTGG
3' ss Score
8.66
Exon sequences
Seq C1 exon
ATAATGTTCACTTTCAGCAGTCAGCTCAGATCTCCAAAGCCCTGGTGGATGCTGGCGTGGATTTCCAAGCAATG
Seq A exon
GTACACTAAGACTTTGTTTGGGGGAGGTGGGGGACAAAGTATCTGGTGGGTCTAGTTTCTTCTTTGGGGGTTACTTTTTTCCCAAGGAAGTCTCAGAAGAGAGGAAGAAAAGAGAGGCCCCTTTTCATTCCACTGTGAAGTTGGAGACGTGATATCCTTGAGTCATACAAAGAGTAAATATTAGACAGTTTGAGGTTGAGAAACACAGTATTACATATCCTGGGAGTGTCAAAACACCATTCTTCGATCCCTGTGATGGTTCAGTCTCTCCCTGTTTTGATTCGAAAGTAATCACTTATTCTGTAAATGTGTGGCAGAGTAATTCTAAAGTGAAACCAGCATGATAATAGCTGAAATGTAAAATTCATTCTGTTATTATGATTACTAGCCACCCTAACAACAGTGGGGTATTAATAATCAGCATGCTTCAGTTCTTGCAGTTGCTACATTATCTTTTGCTGAACAACTGCAGGCAGCAAACAATTAGGCTTGTTCATAAAGTCAGAAATGGCTGGGGCTGGTTTTGCCTGTACAGGAGGTTTGGGGTACTTAGATTAACTCATCTTCTTCATTAGAATTCTTCATCAGACTAAAAAGAATACATTATTGTTTTTATACATTCTTACATATACACACGTGTCTTGCACTAATAATACAATAGTATAAAACGCAACTTTCTTAACTGCTTTGGCTAGAAAATATTCCCCCACCCCCACCCCCACACACTTCTGACACATAATTTGCTTCATAATGGGTTTTAATAATGCCCACTATCCAGGAGTAGGTTTTCTATTTTGTACTGAGAAAACTTACCATCTCTTTTGGGCCAGGTTCTCAGAAGAGGTTGAGGCTTGTTTTTTTCAGTGTTTAAAGCAAAGTCAGATATACTTGAGGCATGATTAAAATTAACATGTCTCAGGGATATGTACCTGCCTGACATAAATGTCAGGTAAGTGGAGGTTTTAATTCCCAGGGTAAAATTGAAGTGTTGGTAAATAAGACATTTGACTTTTAACTTCACTTACATTACAGTTATAAAATGTTAATATTAAAATTGATTTTTCTATCCATTAGATGTCTATATTAGAAAATTTTCCTTAAAGTCTGTTTATTTTAATTCATACTACAGTGTAGAGAGATTTGATGCTTCCTAGCCTTAATAAAATAGTATGGCTGCTGGTATAAACCTTCCCATTTAGAGTGTAGTATTTAAGTGACCTTTGAGTTACATTTAAAGGTTGATTGGGGGACTTTAATTAAGGAAATACCTATGTTAAGTCTAAGCGCACTCCAAAGCATAGTAGATTAAAAGAGCACCGATTCTTTCAGGACTGAACAGGTCCTGAAAAGCTATGGGGAAGAACTAGACACCCTGCTTGATCCACTTTAGTTTATAAATAATTCCCATTTTTATACCATGCCAGAGTTCACTTGACTTTTTCCTTTGTAAAGACAGGTGACCTCCTAATTCTGACCTCATTCTCTCCTCTCCAG
Seq C2 exon
TGGTACACGGACGAAGACCATGGGATCGCCAGCAGCACAAGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030763:ENSRNOT00000040482:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(11.5=100)
A:
NA
C2:
PF0032616=Peptidase_S9=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]