BtaINT0052396 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015330 | DPP4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MU57]
Coordinates
chr2:34518785-34519771:+
Coord C1 exon
chr2:34518785-34518857
Coord A exon
chr2:34518858-34519650
Coord C2 exon
chr2:34519651-34519771
Length
793 bp
Sequences
Splice sites
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
3' ss Seq
TTTTTTCCCAATCTTTCTAGGCA
3' ss Score
9.93
Exon sequences
Seq C1 exon
GCAGTTAATTACAGAAGAGAGAATCCCAAACAACACACAGTGGATCACATGGTCATCAGTGGGTCATAAATTG
Seq A exon
GTTAGTAAGTCTCTCTTCTTTTCAGGAAAACAATGGCTCAAATCTTTCATTTGCAGAAGCTCCTAACCCTGATACAGAGCAGATTCTTAGGGAGGCTGTAGTCACTATCACATAGAGTGTTATTGCCTAAAATAACATTTTATTAGACTAACAGAGTAAATATTAATACAATTCCTGAAAGTTTCTGAACTACTCTTAGGAAATTGTTTATTTCCTGGCAAAATGTCCATTAAACTCAAATTCTAACCCTGTTGTATTTTGTTTTTTGTTCTGTTTTATTTTGATAATTTTTCTTGAGGCTTTCCCACTTTCTGTTAGTTCTTTGATTTTTCCATATCACTATAGATACACCTCCATGTCCTGTAGTCTTAGGAGAATGTCAGAAGTCCTGAAGAATCTAAACAGGAAGACTGTTTATCTGCAGTTGACTCTGGGCTTGCAGCTGCCTTCTCTCTACTCAGCCCCTGCGGAGAGAAATGCAAAGCACGCATCATTCTGTAGAAGTGGACAGTCTTTGGGATTTGCATACACTTTACTATTCAATAGCAGTGGTTGTGGGCTGCTTCTTTTTGGTAGATAAAGGGTGTGTTTAGGATTATTTGGATATTATAGCATGTATACTTACACATTTAAAACATAAATGACTCTTCCTCCTGCTCAAATGGAATAATCTAAGGTAGTCATTCCACTTGCATACCAATATTATTTAAGCATAAAATAATAGATAAATTTTTTAAACTCTAGGATAAAATATAACATGTTGTGTATCCATCTTTTTTCCCAATCTTTCTAG
Seq C2 exon
GCATACGTTTGGAACAATGATATTTATGTGAAAAATGAACCAAATTCTCCAAGTCAGAGGATCACATGGACTGGGAAAAAAGATGTAATCTATAATGGAATAACTGACTGGGTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015330:ENSBTAT00000056886:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(14.6=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(24.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTAATTACAGAAGAGAGAATCC
R:
TCATAAACCCAGTCAGTTATTCCA
Band lengths:
192-985
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]