HsaINT0051794 @ hg38
Intron Retention
Gene
ENSG00000197635 | DPP4
Description
dipeptidyl peptidase 4 [Source:HGNC Symbol;Acc:HGNC:3009]
Coordinates
chr2:162038302-162039021:-
Coord C1 exon
chr2:162038949-162039021
Coord A exon
chr2:162038423-162038948
Coord C2 exon
chr2:162038302-162038422
Length
526 bp
Sequences
Splice sites
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
3' ss Seq
CTTGTTTTTTTTCCTTCTAGGCA
3' ss Score
11.54
Exon sequences
Seq C1 exon
GCAGCTGATTACAGAAGAGAGGATTCCAAACAACACACAGTGGGTCACATGGTCACCAGTGGGTCATAAATTG
Seq A exon
GTTAGTGAGTCTCTCCAGTTGTCAGAAAAATATAGGCTCAAATTTTTCATAGGCAGAAGTTACTAACCCTGATACAAAGCAGACATCTTAGGAACTCAATACTTCACTATAGAACATAGTGTTATTGCCCAGGATCTAATGTTTGTCTGCAGCTGAACTTCTCTCTTCCAGAATGCAACTGCCTTCTCTCTACTCACTCTCCCAATAAAGAAATATACAAGCATATATCATCCTGTAGAAGTGGTCAGCCTTCTCGGTCTTCTCATATACTTTAGCATTCAAATAGTGGTAGTTATGTACTTCTCATTTTTAACACATTATTAATGGTTTTAGGATTATTTTGGGATTATAGGCTGTACACTTGTAATTTAAGAATGAGAGGGAAGGAGTAAATGACTCTTCCTGTTTGAATGGAATATTTGACTATGGTAATCCTTACATTTGCAATAGATAAGTGTTTCTACAATTCCGGGATAAAAATATGACATGTATTATAGATATCAATGCTTGTTTTTTTTCCTTCTAG
Seq C2 exon
GCATATGTTTGGAACAATGACATTTATGTTAAAATTGAACCAAATTTACCAAGTTACAGAATCACATGGACGGGGAAAGAAGATATAATATATAATGGAATAACTGACTGGGTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197635:ENST00000360534:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(6.5=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGATTACAGAAGAGAGGA
R:
TCATAAACCCAGTCAGTTATTCCA
Band lengths:
192-718
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development