GgaINT0048338 @ galGal3
Intron Retention
Gene
ENSGALG00000011110 | DPP4
Description
NA
Coordinates
chr7:22725338-22726632:+
Coord C1 exon
chr7:22725338-22725410
Coord A exon
chr7:22725411-22726511
Coord C2 exon
chr7:22726512-22726632
Length
1101 bp
Sequences
Splice sites
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
3' ss Seq
ATCGTAATGATATTTTGCAGGCA
3' ss Score
5.81
Exon sequences
Seq C1 exon
CTCCATCTTAGATGATGCACTACTACCTAATGACACACAATATATATCCTGGTCACCTGTTGGTCACAAACTG
Seq A exon
GTTAGTAAAGATAATCTAAACTTATACAGCCACTTCTGTACCCATGACAGAGAAGCTCACGTTAAATATGTCCTAGGGGTTTTGGGGCTTTCCTACTTCTGGGTAAAATACCTGAACTAGTTTCCAAAATGGCTGACCACTGCTGTTGGAAATACTCAAACATTCCTCTTTGTGTTACGTTCTTTTCAGCAAAGAACAGACATTCCCGAAAGCAGTATGGTCCAGTATCTTGCACAGGAACTTAGTATTTTTACAGTAGCAAACAGTAGCTCATCTCTTTCAAAGGCAATATCATTACAGCTGTCTACACGTTCACCACTATGGTTTTAATCTCTTAATAAGAACAAATAAAGTTTTATTTAAGGATGAATATAACAGGGATTAGAGGATCAAAATCATCTTGTGTACTCTTTCACATTGTCCTTATTTTCTTTTTCTCCTCCCTAATCCATGACAGGTTTGATAGCCACTATGTTTGCAAGGCTGTGTTGGATCTGACCTAAAGACCAATCACAGTAGTATGCGGTGTTTAAGTGTTCTTATTCCTTGTAGTGGATTATGGAGCCCAGTCACAGAGGCAACGGATGTTGAAAATAAATTGCTGCATCTCAGAGAGAAGCTCTGGAATACAACTGTGCTGTTCAGTCGCTAAGGGAAAAAACAAGGACATTTTACTCAGAAATGCATTATCTTTGGAGATCTGTTAGCAACACTGAGACTCTTATCAATGTTTTACCAAAATATTCTCAGTTTTCTTTGAGGGACAAATGAGTGAAAAAAACAACTCCTAAAATAAACTTGTATCTCAAAGGAAAATTAATGGCAAGGTTTTCTTGATGCAATAATAAGGTCATTTAAAACAACTGTTCTTAGGGTTGCATTTTTGTTGTTTTTTTTTTTTTTTTTCTGGCATCTCATCTTAAATTCAGTTTATTACTCTTGATTTGTATTAGTAATTCATATTTAAGTATCAATGAAGTTTGAACATGCAAATTTAAAGGACAATTTTTGTCACTGGGAGTAAATGTAAATAGGTTGCTAAATGTGGCATAAAAAGGAAATAGGGTTTACTCTAAAAGTAATCGTAATGATATTTTGCAG
Seq C2 exon
GCATATGTTTGGAATAATAATATTTATATAAAAGCTTCACCAACAGCAGCACCTGTGCAAATCACTAGCAATGGAAAGGAAAACAAAATTTTCAATGGAATACCAGATTGGGTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110:ENSGALT00000018100:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(6.5=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCTTAGATGATGCACTACTACC
R:
TCATAAACCCAATCTGGTATTCCA
Band lengths:
191-1292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]