MmuINT0062457 @ mm10
Intron Retention
Gene
ENSMUSG00000000392 | Fap
Description
fibroblast activation protein [Source:MGI Symbol;Acc:MGI:109608]
Coordinates
chr2:62547755-62548642:-
Coord C1 exon
chr2:62548570-62548642
Coord A exon
chr2:62547876-62548569
Coord C2 exon
chr2:62547755-62547875
Length
694 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
TAGATTTCTACCATTTTCAGGCA
3' ss Score
6.08
Exon sequences
Seq C1 exon
GGAATTTGTAAGAGGATACGAGCTCCCTCGTCCAATTCAGTATCTATGCTGGTCGCCTGTTGGGAGTAAATTA
Seq A exon
GTAAGTGTTTAGATTATAAAAGTGTTTGATCATTTAAATAAAAGAGGAGCCATTTGATTTTGGCCTTTGTTAAATTTCCCTGCCTAAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATCATGACTATTTCAGTGGCTAAAAACGGGAAGAGTTTGGATAAATTGAAACCCGTTTGAGAATTCCGCAAAATCTCAAGCTCATGGATAGACTTCTTTAAATATCGCAGTCAAAAACTTTATCCTTATACTCAGCCAGAATGCGTGGTGCCAGAAAACTCAGGAAAAATATGGTTTTCACAAGTTTCCCAGACTAGCTTCAGACAACATGAAATTTTGTCCAAGCTCTTATTTAAGGGCTCTAAATAAAGATTAGATCTGGTTAGCTATTAATATTCAGGGGTTTATTTGACTACCTGTCAATATGCACAATTGCTTATTGGATAACAAAATAATTGTATTATAGTAGACATTAATTCTTATTTGATGCAGATTTTAAATCATAATTAATGTGGGTTGGTTTTATTTTTAACCTTATTAAATTATTTTAGTTGTGAATCCTTTTGCATCTGAATTGCCAGCCCTTTTAAAGACATAGGTAAATAATTAAATCTACATTATCACTGTATTTTTGGGGTAAATTTCCCTTATTGAGTAGATTTCTACCATTTTCAG
Seq C2 exon
GCATATGTATATCAAAACAATATTTATTTGAAACAAAGACCAGGAGATCCACCTTTTCAAATAACTTATACTGGAAGAGAAAATAGAATATTTAATGGAATACCAGACTGGGTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000392:ENSMUST00000102732:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(6.5=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTAAGAGGATACGAGCTCCCT
R:
CTTCATAAACCCAGTCTGGTATTCCA
Band lengths:
190-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types