GgaINT0046614 @ galGal3
Intron Retention
Gene
ENSGALG00000011099 | FAP
Description
NA
Coordinates
chr7:22652379-22653232:+
Coord C1 exon
chr7:22652379-22652451
Coord A exon
chr7:22652452-22653111
Coord C2 exon
chr7:22653112-22653232
Length
660 bp
Sequences
Splice sites
5' ss Seq
TTGGTCAGT
5' ss Score
5.07
3' ss Seq
AAATATTTTCTTATCTTTAGGCG
3' ss Score
7.85
Exon sequences
Seq C1 exon
TGGTTTTGTAACAGAAAATCAGCTTCCACATAAAATTCAGTATATATCCTGGTCACCCGTTGGACACAAATTG
Seq A exon
GTCAGTAAAGATAATAAGGCTAGAAGACTTTTATTTGCCTTTGGTTATTGTTTCATTAGGCCATATTTTTGGCAAGTCTGTTTGTTTCGACCTTGCTTATGAATAAAAATGATTAAAAAAAACCAAATAAGCACCTTTTAATTTGTCAAATTTTAACTTCACTGGTTTTCAATGTAAGAATCTGCGCTTTTAACTTTAGTATGTATTTTACTTAGCTAGTCAGTTTTTTTTTTCCTTTTTCTTTTATGGATAATTACTTAATATTTCAAATTATTTTATCTCTCACTAATTCTTATGGACCTATTGACTATAGTAAAAAGTTAATAATTATAGTTCTTGGAATATTCATGCAAGAAAATACACTTTAAGCATCATAATAATTTTAGAAAACTCACAAGAAATAAAAATTCAAATGGAAAATATATACATATATTTTGTATTGGAGCATCCTATATTTCACTGGAGAGTCATAGCTGAACGTAGAATTTGTCCTATAAGATAAAATTTATTTACAGAAGTAGTTGTTTTTGCATAATTTGCAAAGGTTTTAATACAGAGTTATTAAAAAATATTTCTTGTTTTGTATTCATTGACTGCAAAAAATCTGACAACCCCTCTTTTTGATGTGTGTAATCATAAAAAATATTTTCTTATCTTTAG
Seq C2 exon
GCGTATGTTTACCAAAATAATATCTATTTGAAACAAAGTCCAAGAGAGGCACCAATTAAACTAACTAGTGATGGAAAAGAAAATGAAATATTTAATGGGATACCAGATTGGGTCTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099:ENSGALT00000018083:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(6.5=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTGTAACAGAAAATCAGCTTCC
R:
TCATAGACCCAATCTGGTATCCCA
Band lengths:
191-851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]