DreINT0059707 @ danRer10
Intron Retention
Gene
ENSDARG00000079420 | dpp4
Description
dipeptidyl-peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-081104-277]
Coordinates
chr22:11613710-11614776:-
Coord C1 exon
chr22:11614707-11614776
Coord A exon
chr22:11613831-11614706
Coord C2 exon
chr22:11613710-11613830
Length
876 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTGTTCCTAAATCCATACAGGCA
3' ss Score
6.63
Exon sequences
Seq C1 exon
GGATTTTATAAATACAGATATCCCGCACGATGTCCAGTACTTAGCATGGTCTCCAACTGGCCACAAACTG
Seq A exon
GTGAGTATCTTATCAGTACAATACGGTATCATGTAAGACTCATAAAACCTTATCTGTGTTGTCTTCAGTTAGCCAGTTAATGTCACATCATTGTTCGATAAATGTTTGACTTTGTGTTGTTAAAGTTTATTCTTTCGGCTTGATAAGCTTGTTTTGCTGACGGTGCTAATATAAAACTGTTACAGCTAATTGTTCCAAACTCCTAGCATGACAAAATGCTAGGAGCCCCCTCCTAGCCCCTCTCTTCTTTCTGTTTTTGAGTTCTTTCAGTTATATGTTTAATTGATTTAGTCAGAGATAATAAATAAAAGGATCAATGATGCTAACTTGACTAGTAGTAAGTTATTCGCTATCTGTAAACAGCCTTTTCATTAACAAGCTAATTATTAGCAAGTAGCACTGTAGCATGATGATACTGTTTGATCATGGCTCTAGTGAAATAGAGGTTTATATTGATAATATTATTATGTTTTAGATTTATAGCAGTGATATATTTTTAAAGACATGTATACTTAAATATCCTAATTGCAGTGTCATTCAGTACAATCTTTTTATACTATACACTGATTACCTACACATTTTATTTTTAGGTTGTAGATTGAGATTTCATTGTATTATTTAATGTATTTATTTATTCATTCATTTATATTGTAATAGCTTTTTTGTTTTTAGTACTCTATTTTAAATTGTATTTTATGTTTTAATAGTTTACGTTTAAATGTATTATATTGCACTTTTTTATTAATATGTAGTTTTGGTAAATATTGCAAAATCCACCTTTTTTTTGTATCTTGCTTATGTTTACGTTCAACTGATATACAGTTCAAATGTATTCAAATTCATCCAAAAATTAATATTGTTCCTAAATCCATACAG
Seq C2 exon
GCATTTGTGTGGAAATACAATGTTTATGTGAAGGAAACGCCCAACTCTGCGTTCAAGCAGGTCACTACAAACGGAGCTCATAACCTGATCCTTAATGGCGTTCCTGACTGGGTGTATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079420:ENSDART00000109596:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(6.4=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATACAGATATCCCGCACGATGT
R:
CCTCATACACCCAGTCAGGAAC
Band lengths:
182-1058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]