MmuINT0062457 @ mm9
Intron Retention
Gene
ENSMUSG00000000392 | Fap
Description
fibroblast activation protein [Source:MGI Symbol;Acc:MGI:109608]
Coordinates
chr2:62385812-62386699:-
Coord C1 exon
chr2:62386627-62386699
Coord A exon
chr2:62385933-62386626
Coord C2 exon
chr2:62385812-62385932
Length
694 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
TAGATTTCTACCATTTTCAGGCA
3' ss Score
6.08
Exon sequences
Seq C1 exon
GGAATTTGTAAGAGGATACGAGCTCCCTCGTCCAATTCAGTATCTATGCTGGTCGCCTGTTGGGAGTAAATTA
Seq A exon
GTAAGTGTTTAGATTATAAAAGTGTTTGATCATTTAAATAAAAGAGGAGCCATTTGATTTTGGCCTTTGTTAAATTTCCCTGCCTAAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATCATGACTATTTCAGTGGCTAAAAACGGGAAGAGTTTGGATAAATTGAAACCCGTTTGAGAATTCCGCAAAATCTCAAGCTCATGGATAGACTTCTTTAAATATCGCAGTCAAAAACTTTATCCTTATACTCAGCCAGAATGCGTGGTGCCAGAAAACTCAGGAAAAATATGGTTTTCACAAGTTTCCCAGACTAGCTTCAGACAACATGAAATTTTGTCCAAGCTCTTATTTAAGGGCTCTAAATAAAGATTAGATCTGGTTAGCTATTAATATTCAGGGGTTTATTTGACTACCTGTCAATATGCACAATTGCTTATTGGATAACAAAATAATTGTATTATAGTAGACATTAATTCTTATTTGATGCAGATTTTAAATCATAATTAATGTGGGTTGGTTTTATTTTTAACCTTATTAAATTATTTTAGTTGTGAATCCTTTTGCATCTGAATTGCCAGCCCTTTTAAAGACATAGGTAAATAATTAAATCTACATTATCACTGTATTTTTGGGGTAAATTTCCCTTATTGAGTAGATTTCTACCATTTTCAG
Seq C2 exon
GCATATGTATATCAAAACAATATTTATTTGAAACAAAGACCAGGAGATCCACCTTTTCAAATAACTTATACTGGAAGAGAAAATAGAATATTTAATGGAATACCAGACTGGGTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000392-Fap:NM_007986:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(6.5=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTAAGAGGATACGAGCTCCCT
R:
CTTCATAAACCCAGTCTGGTATTCCA
Band lengths:
190-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: