BtaINT0060664 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008140 | FAP
Description
Bos taurus fibroblast activation protein, alpha (FAP), mRNA. [Source:RefSeq mRNA;Acc:NM_001098001]
Coordinates
chr2:34325678-34326567:+
Coord C1 exon
chr2:34325678-34325750
Coord A exon
chr2:34325751-34326446
Coord C2 exon
chr2:34326447-34326567
Length
696 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
TAACTTACCACCACTTCTAGGCA
3' ss Score
5.16
Exon sequences
Seq C1 exon
GGAGTTTATAAGAAGAAATGAGCTTCCTCGTCCAATTCAGTATTTATGCTGGTCGCCTGTTGGGAGTAAATTA
Seq A exon
GTAAGTGTTTAAATTATAGAAATGTTTAATCATTTAAATAAAAGAGGAGCCATTTGATTTTGGCCTTTGTTAAATTTCCCTGCCTGAAAAAAAATACATTTATGACTATTTTAAGTGGTTAAAAATGGGAAGAGTTTAGATAAATTGAAACCCATCTGAGAATTCCGCAAAATCTCAAGCTCATGGATAGACTTCTTTAAATATCGCAGTCAAAAACTTTATCCTCATACCCAGCCAGAATGCGTTGTGCCAGAAAGCTCAGGAAAAATATGGTTTTCACAAGTTTCCCAGACTAGCTTCAGACAACATGAAATTTTGTCCAAGCTCTTATTTAAGGACTCTAAATAAAGATTAGATCTGGCTAGCTATTAATATTCAGAGATTTATTTGACTTTCTGTTAATATACACAATTATTTATTTACTTAATAAAAGCAACTAATATAATAGCAGACATTATTCTTTATTTAATATATAGACTTTAAAATCATAACTTTTATATGTTAAAAATCATAATGTTAATGTGAGTTGGTTGGTATTTTTTGACCTGTTAAAATGGTATCTTAGTTGCAAGTCTTTTCATATCTGGATTATCACTCTTTTTAAAAGTATTAGGTGAATAATTAACACAAATATGCAAACTTTATTGTGTTTCTTATGAAATTTCTCCTTATTAACTAACTTACCACCACTTCTAG
Seq C2 exon
GCATATGTCTATCAAAACAATATCTATCTGAAACAAAGACCAGAAGACCCACCTTTTCAAATAACATATAATGGAAAAGAAAATAAAATATTTAATGGAATCCCAGACTGGGTTTACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008140:ENSBTAT00000010702:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(6.5=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]