RnoINT0050842 @ rn6
Intron Retention
Gene
ENSRNOG00000030763 | Dpp4
Description
dipeptidylpeptidase 4 [Source:RGD Symbol;Acc:2515]
Coordinates
chr3:48339157-48340097:-
Coord C1 exon
chr3:48340025-48340097
Coord A exon
chr3:48339278-48340024
Coord C2 exon
chr3:48339157-48339277
Length
747 bp
Sequences
Splice sites
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
3' ss Seq
TGTTTTTTTTATCTTTTTAGGCA
3' ss Score
11.16
Exon sequences
Seq C1 exon
ACAGCTGATCACAGAAGAGAAGATTCCAAATAATACACAGTGGATCACATGGTCACAAGAAGGTCACAAATTG
Seq A exon
GTTAGTACATTTCTCCTGCTGTCAGAATAAAGGTTGGCTGGAGTCTTTCATAGGCAAATGATTCTGACCCTAATATAAAGTACAGATTTTTTGAAAGCCCTTTCACCCATTATGTTAGTAATATAGGGGTAGTACTACTCCAAACAATAATTAATGTTAAAATAGAATATTAAAATATAATATACAATCGAATATTAAAAGTATTGATCATATTGTTGCTTATTCACTGGGGGAAAATGCTTATTAAACTCTTAAGTTCTCCTTGTCTGCTCTGCTTGAATATTTTTGAGTCTCTCTTCAAAATCACTGAAGATGCATCTCCTGTTTATGGTGCTAAAAGAGTGTTAGGCGCCCAAAAGAATTTAAATGACAAGATGGAATGTTCTTCTGCAGGTGCACTACATTCCTCTACTAATGTCCCAGACAAGAAACACAAGCCTACATGATCCTGTGTAGATGGTCTATGGGCTACGTTGTCACACACACACACACACACACACACACACACACACACACACACACACAAACACACACACACACACATCATTCACAGCTGCAAGCCTTCTTGTTTCAACATATTAAAAACGTTTTATTATTTCGAGATGATTCCTGTGTCATTTTAAAATGAGGGTCTTACTTAGATGGATGCTCTGCGATTATCTTCTTCTTTGCATAGTATTTTAAGATCCCACTATAAAATATATTGTAATGTGATTACTGATATCAATGTTTTTTTTATCTTTTTAG
Seq C2 exon
GCATATGTCTGGAAGAATGATATTTATGTTAAAATTGAACCACATTTGCCTAGTCATAGGATCACATCAACAGGAAAAGAAAATGTAATATTTAACGGAATAAATGACTGGGTTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030763:ENSRNOT00000040482:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(6.4=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTGATCACAGAAGAGAAGA
R:
TCATAAACCCAGTCATTTATTCCGT
Band lengths:
192-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]