BtaINT0052850 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016692 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr15:28539656-28546144:-
Coord C1 exon
chr15:28546005-28546144
Coord A exon
chr15:28539810-28546004
Coord C2 exon
chr15:28539656-28539809
Length
6195 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
CGTTCGCCTCTGCCCCGCAGGCA
3' ss Score
9.76
Exon sequences
Seq C1 exon
TTCCAGGTCCCCCTGCGGGCATCAAAGCTGTTCCTTCATCCGCCAGCAGTGTGGTCGTGTCATGGCTCCCCCCAACCAAGCCCAACGGGGTGATCCGCAAGTACACCATCTTCTGTTCCAGCCCCGGGTCTGGCCAGCCG
Seq A exon
GTAAGTGGGCCCAGGGCTGAATGTTGGGCAGGACAGGGGAAAAGGAAAGTACCCTATAGATCAGCTGCTTCTGGGCCAAATCCTGGGGCTGGTTATATCTGTGTTTCGACTTGATTCATGGATGAGTTTGGGCACCGGTCACCCAAGAGTGGTTGAAGCCTTACCCAAGTCCATCTTGGGTCAGTCCTCCATTCCAAGGACTACAAGATTATCACAAGCCCTGGAGGCTTATTTGAGTAGGGGTCTCCTTCAAGCAGGTGGGAGAGGGAGGACAGGGCCTCAGCTCTTCTGGTCGGGCTGACCAAGGAAGCTCCTAGCAGATCCCAGAGCTCTGGACTGAGCACTCGCTAGCCCATGGCTTTTGGAAGTGAATCAGCTTTTCAGCATGGTCAGTCTGGGCTTAGAGGGCTGCTGGAGCTCTGCCCCAAGTGGCCCCCTCAGCATGGATCCAGTTGAAGAGGGGAAAAGATGGGGGCAGCTGGGGGAAGACCAGGGCATCTCTCTCTGGGCGCTGCCTGCCCAAACCTGGGAGTATAAAGTAAGGAGGCCCCTGGCACTGGGGCACAGTGTGGGGGGCTGGCCCCTGCCCTCCATCAAGGGCTGCTAACACGGAGGAGAGGATGAGGGCAGGTTCTCATCTCATGCAGGTGCCTTTAAACCCACATCCCATAACAGGCATCCTCCCCTCTGCCCCTTTCCTTATCTCCAGCCACTCAGTCACATACTCTTAAAGGGTGGCTGATCTGTAGTATACCTGTTCTAATTGTGAGAGCAAGTGCAAAGAAACACGTGCCCTTGGGATGCTTCCAGGCTAGTGAGGGGAGCAGAGGGGGTGCTCCCGGGGGCGGGGGCGTGAGTACTGTTGAGAGATGTGCTCAGGATGGGGGAGATCAGGGAGCAGGAGAAGGCCGGCTTCTCCCTCCATCAGCAACTAGTGATGTGACGGCAGCCCCAGCACCTGCAGATGAGCTTCTGACAGCCCAGAAAGCTGCCCTGAAATTGCTCGGTAATTGTGTCATCATCTCGTCCCCCGCTCTCCGCTTTCCTGTGGTCTTTCTGAATTACCCTCTGAGCCATAGGCAGCCCCGCTCCTCGCCAGTGAGGCCATAGCTCTATTCCCAGAGGAGAAGCCCAGGAATGTCTTTTCAGTGACTCCGCCCCCTCCTCTCCATCCTCACTGTCACTATTTCACATGCAGGAAAGTACACATATGATGACTGTACAGCCCCATGAACTTTCATAGCACTTCCAGGCACTGAGTGGGGGGATTCCCAGAGCAGGAAATAGGGCAACACCCCAGAAGGTCACCACCCTCCCCCTACAGGTATAACCATCATCCTGACTTCAGATTAATACTATATCAAGTACAAATACACAATATATATGGGCTTCCCAGTTGGCTTAGTGGGTAAAGAATCTGCCTGCAATGCAGGAGATTTGGTTTCGATCCCTGGGTCGGGAATATCCCCTGGAGCAGGACATGGAAACCCACTCCAATACTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCAGGCTACAGTCCATGGGTAGTCCGTGGGGTCTTAAAGTGTTGGACATGACTGAAGTGACTGAGCACACATGGATGCATGCATTATATATATATACATGCATGCATTTTATATATATACATGCTGCTGCTGCTAAGTTGCTTCAGTCATGTCCGACTCTGTGCAACCCAATAGACGGCCTCCCACCAGGCTCCCCGTCCCTGGGATTATATATATATATATAATATATATATATAAAATCTGCCTGGCTTCTTCGACCCAACATTAGTTTGAATTTGTGAATTTCATCCATATTGTTGTGTGTGGTTAGAGATTATTCACTCTCACTTCTGTATAGTTTTCAATTACATGTATATATCACAGTTTATTTATAATTATCCATTGACAGGCATTTGAATAGTTTTCCGTTTGGGGCTATTGCAGTTGGTGCTATTGTGAACTCCGTGTCTCTTGGTGCTCTTGTGTATATATTCCTGTTGGGCCTGTGAAAGGAACTGCTGGGTCATGGGGTCTGCAGATGTTAGGTTGAGAACTCTGTCATTGTCGGGGGGGTGTGTGCCAATTTTCCAGTTAACATGTTCAGCTGTGTTTTCTGCCCCTTTGCCCCTCTCCTCCTGCCCCTCCCCCCAGTACACACATACCTTCCAGGCTCTTTTTACACTAGGCTGGTCACCATTCTGGACACCTGCTCTGCCTTTCACACCCCTGCACCTCTGCCCCTACTGATCCTACCATCCACGGCACGTTCTTCATCCTCTAGCACACACTGCATGTGTTAAATGGCAGTTACCTGCTCACTCACCTGTCTCCCGCACTGGTCTGTGGGGCCCTGTGAGGACAAGGGCGGCATCTTTTCATCTTCAGGTCCCGAGCCATAGAACACTGTGCCTGGAACATCCTTGTCCAGGACATACATTTGATGAATGAATTGCTAGCAGCCTAGCAATTGTGAAGTCTTAGACATTGGGCAAATTTTCCTTCATAAAGTGATGAGAGGGTGGGAACTCCTTCTCCAGCTTGGGTCTGTACGCGCAGTACCTCCTCTCATAATGAAGTCTTTCAAAGGGATTGGTGTCTGGGAGCAGAGTGTCCTCGTTAACTCAGTCTCCAAGAGCCCCAATCCACTGGTGGGGGACACTTCTAGGCTCCAGAGCAGAGCCCCTGGTTCCCATGCCCTCCTCCTGCTACTGCAGACCCGGAGACCCTCCCTCCTTCCCCTTCATGTCCCGAGCGTGAAGGAACCACCTCTCTCCTGTGGGTGGGGGGCAGATGTGCTGGCGTGATGAGAACTCAGTTCAGCCATGTTGCAAAGCAGGGACTGGGCTGAACAAGGGGCCAGGGGACCTGACCACCACCTGTGGTTATGGGTGGTGGGAGATCGTTTTGTAGAAATATACTCCAGGTTCCAAGCAACTGCATCACAAATTCATTTATGAAAGAGCTCCAGGATTGAGGGCACACTCATGTACATGGAATGAAGCAAGACCGCGGGAATGAGAGGCTGAGAGGCAGATGCACGTGTGTCTGAGTCTGAGTGTGTGCATACATACTGGAGTGCGTGACCTTGTGTGTGCAGAATTCTCAGAATAGATGTGGGAAACTGCATGAGGTGCAGGATACCAGGAATTACACCCTGGGGCTGGCCAAGGCTAGCCAGAGCTGCACTGAGTCCTGTTAGAAATGTTTCCAGTTTAATACATTTGCTGTTTGTCAAAATAATACAATTTTATTGTAGAAAATTCTATAAACATATAGAAGAATAGAGAAGAAAGTAAAAATTACTTGCATTCTCACTCTCTAAAGATAACCACTGGCAATGTGTTGGGGTATAATTTTCCAATCCTTGACCTGCACATACACTATGGTTTTGTTTTGGTTTTTTATAAAATTAAAAATAAAATTTATAAAATATTATATAATCTCCATTTTTCATGTAGTATATGTAGGCACTTTTCTACACCATTAAATATTCTTTTTATTGAAATAGAGTTGACATCAAATATTCTTTTAAAATATTATCTTGAGTGCCTGTATATATATAATCTACTTAACCAGTCCCTGAATTGCTCTATATTTAATCTATTTTCAGTTTTTTACCATTATAAATAATTTTTCATGGAGAATTCTTCATAAAAGTCTTTATACTTATTGTTTTATTATTTTCTTAGTATAAATTTTTATAGGAATCCATGGATCACAAAAAGTATAAATATTTTTGAGGTTTGCATGCACATTTGCAAACTACTTTTCAGAAAGTTTGTACCAACTTACACTTCCACCAGCATTATGAGTAGCATGTATTTTTCCCTTGTGCACATGCTAATCTAAGATTATATATTTTTCATTTTCTGTCAGTTGGATTCTAAACTAAGTTGATTATTTTATTGTGTGTTATGTGATTTTTGGCTTTTTTCATCTTTGGATCATTGTCAATTCATGTCCTTTCTACATTTTATATTTGGGTAGATCATGGTTTTCTTCTTGTTTATTTTTAAGTGCTCTTTACATATTAAAGATAATAACCATTTTTGCTCATATAGGTTGCAGGTGTTTGCCAGTTCATTGCTTCCCTTTTTATTCTAGTTTTCATTATACCATAGGTTTTCTTTTCATATAATTCAAATTTATAAATCATTTCTAGTTATGACTTTTCTATTTGTGATTTTCTATTTTTTATTTTTTGATTAGAAAAATAGGTAAGTAATTAACCTATAGTTTCTCCTTGCATAGTTTTACCTTTTTTTAACCTTTGATTACTGTGATTTTATTTTGGAGTGTAGTTGTATGTTTTTGAAAGTGATTTCAGGAGATTAGGGGGAAGTCCAGGTTAAAAGGAAGGCACCCAGGACCTGGGTAAGATGCTAATGCCTTCCAGGGGAAGCCAAAGCCTTCCTGCCCTGTGTGGACACAATGCACAGTCAGGTACACACTGACAGACACAAGCAAGGATACTTAACTTTTCTCTACACACGCACACACACACTTCCACCCTCACAGAAACACATGCCCCTGTTTACAAAAGAGAAGAACATGTCCCCACTTACAAAGGACTGGCACACTCCTTGCCTCAGGAGTCCTCACTGTGACCAGTCAGGGCAGGCGGAGCTGGATTGCTTTCTTAGTTTGCAGGAGAGAAAACTGAGGCCCCAGGAACCATGAGAGACACTGTGGTCCATACGGTAAGAAAGGCAGGCAGGTGTCAAAGCTACTTTATTGCCCTGCCTCATGCTCAGATATGACCTGCAGATACCCACACGGTCCCGGAGCACTGCACCCTGAAAGGACTTCCCAGCTACCAGGGCTCAAGGTGGCTTTCTGGGAGCTCCTGGGCCCAAGGCCAGCTCCCCACGAGAGAGGCAGCAGGGGGGATCTGCCAGGGAGCTGTGTGTGTGTGTGGTGGGGATGCCTGTACCCTCTCCTGAGCATCTTCTTACAGATGGTCTGGAACCAGAAAGGATGTTTTCTCCTGTTACAAGTCACTGGGCCCCTCAGCCCTCCCATGGGTGGCAAAGAATGTCCCTCTGTGACCCCATGTCTGTCTGGAGATCTGTCCCTCAGCATGTGCTTGAATGTGTCTACACATCCGTGTGCATGAGAGTGTGAGCATGGGGGCATGCGTGTGCAACATCCCCTGACTGCAAAAATAACTAATTACTAGCTCCCTCTGGCCTCGGGGCCCCCCATCTGTTCCAGGGGCTGCTCCCCCTCCCTAGACTTCCGCCCTGATTTCAAAGAGGCCCTGGTGCTGTCCTGCTTTCCCTTCCCCGCGGCTGACCAAAAAATAAAATGAAATGAAAGTCAGCCCCATCCCGCCTGCACCAGGGAAGGGGCTGACAGGAGGTCTGCAAACTAGCGCTTATCAAAAGCTCCTTCTCAAATTCATTTCAATATCTGAGCCTCTGGTTTCCAAGGCAACATAATCTTTTCATCAAAGCAACTGGTAAAACCACTGGGATCCGATATTGTTTTGTTGGCAACTTGTCAAAACTGTCATTTGGTTAAAAAAATTTTTATAGATTTATATAACCTACAAATATATACGGTGATCTATACCACTAATAATCATTAATAAAGTGCTGCCCCGTGAAGCTCTCGTAGTTCTCTCTCCCTCCCCTTCCTCCCCAAGAATGGGGGGGGGGGGGGGAGGGGCAGCGGGAACAGGTGGTAGGAATGAAGGAGACATTAGGCAGTAGGGCTGGCAGGTGACTCTGAGTGGGGACAGGCTGGGGGAGCCTGTCTACAACCCTAATAAGGCAAACGCAGTCATTTAGCTTCTTAGAGACTCCCTTTTCTCAGGGTTTTCCTGGGATCCCCCCCAACCTCCATTCTCCCTTCTCCTGTCTCCCTCCATCTCTCACCCACCCGAAACACTCACATTTCTTGGCCTGAAGCCATCACAGCCAGCGACTAGATCAGTCCAAGAGGTGAACTGAAACTGACCCAGCAAACCGCCAGAGCCGGCCCATCAGTGCCCAGGGCCAAGTCCAGGGCAAGCTGTTCAGTGTTGCTCCAAAACCAGAAAGGGCCAACTAGGCAGGATCCTGTCTCCACCGCCCATCGCCCTGGCCATTGCCCCCACTGAGCCTAGGGCCCCCAGGAAGAGTGGAGGTGGAGACCCAGGGGCCTTGGCTCTTAGAACGCGTTCGCCTCTGCCCCGCAG
Seq C2 exon
GCACCCAGCGAGTATGAGACAAGTCCGGAGCAGCTCTTCTACAGGATCGCCCACCTAAACCGCGGGCAGCAGTACCTGCTGTGGGTGGCCGCCGTCACCTCCGCCGGCCGGGGCAACAGCAGTGAGAAGGTGACCATCGAGCCTGCTGGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016692:ENSBTAT00000030167:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.231
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(51.2=93.6)
A:
NA
C2:
PF0004116=fn3=PD(46.5=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development