RnoINT0051348 @ rn6
Intron Retention
Gene
ENSRNOG00000016502 | Dscaml1
Description
DS cell adhesion molecule-like 1 [Source:RGD Symbol;Acc:1304887]
Coordinates
chr8:50036359-50044015:+
Coord C1 exon
chr8:50036359-50036498
Coord A exon
chr8:50036499-50043861
Coord C2 exon
chr8:50043862-50044015
Length
7363 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
GACTTTGTCTCTGCCCACAGGCT
3' ss Score
11.6
Exon sequences
Seq C1 exon
TTCCAGGCCCCCCTGCTGGCATCAAAGCTGTCCCTTCATCAGCTAGCAGTGTGGTCGTGTCCTGGTTGCCCCCAACCAAGCCCAATGGGGTGATCCGAAAATACACCATCTTTTGTTCCAGCCCTGGGTCCGGCCAGCCG
Seq A exon
GTAAGTGGTGAGGGGGACAAGGGAGCAAGTCTTTTAGGGGACAACACATCAGTCAAACTGTGGAACTTAACTGTGCTTTTCTGTGACTCATAGTTTGGAATGGTTGCTGGGCAAGATGGCTCACTACGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAGATGGCTCACTAGGAGAAGGTGCTGTTAAGCATGAGGACCTGAGTCTAAGGCCTAGGACCCACACATTAGGAGATAACCTACATCTGCAATATGTTTTTTTTGACACCACACACACACACACACACACACACACACACACACACACACACACACACACACACCCCACGATATGTATGTGCCTCTCCCAAATAAGTAAATAAATTTAATAAAAAATACTTTTTAAGTATGGGTACTGGTTACCCCAAAATGGATGAAACCTTGTGTGCTAACCATCGTGGGCCAGGCATCTGCTGTAGAATCGGCAAGCTTGTCACAGCTTTGGAGCCCCTCTAGAACCATATGAGTCACAGCCAAGCAGACAGAGAAAGAAAAGCCACTTAGCTCTGCTCTTCCAACCTGCTGACCCCAAGCACTCCCATGGCTGGTCCAGGGACGCCGGGAGTACGTGAGCTTTCATTATAGTCTTCCAGGTTTGGAGGCAAACGCTGGGCCTCTACCACAGATGACTGCCACAATATAGAGCCAAGCAAGGAGGATGGGTGGGAACAGGATAAGGGTAAGGGCATCTCTGACCAGGACCTGGACTTCAATGGGGGTGAGAGCCTAAGAGTCTTCAGTATATTCCCTGATCCGGGGAGATGGGTACCCCCGGGCAGAGGTACAAGCACCAAAGTCAGACTTCTCCTGGGAGTTCAGAGAGAAGAGAGAGAGGATGGGGCAGGCAAAGCGTTGCATATGCCCACAGCCCATAATATGCTTTCTTCTCCTCTCCTTTTCTGATACCCAGCTAAGTGTCTTCTCTGCAGCACATCTATCCCTGGGACAGGAGCAGGGGGAAACCCCTGCCCTTGGCAGCTCCAGTGGTTAGGATCAGCCTGTGAGAACATCTTGGGGGTTTAGGGGAAGTGCATCAGGCTTAGGGCTGGGGAAGGAGCAGGAGGAAGTGTTGCCCTCGATGATGGCAGCTCACCATCAGCCACAGATCTGCATGACTCTGGGCCAGGAATGCTGCCTGTAGCTGCTGGGCCACTGTCACCCCTCCCTCCTCGGATTTCCTGAACCACCCTTCTGGAGTGAGCACCTCGGCTCCTCAACATGGAGTCCAGGAGTCTCTTCCCAGAGAGCAAGCCCACTGTTTCATAAGCGTCCTCACTGTCTTCATGGGCACTGCCACATGCAACATAATGCTGGCAGCATGCCCACATGGTGGCTCTCAGATGGGACATTAGAGCACCCCTAAAGACCCTCCGATGCGTCTCCATTACCACCTTGTCTCCCTCCACTCTCCCAACTGCACGGCTTAGATGAATGCTGCCTCTCTCAGCCTTCAGTGTGGGTGGAGCCCTGCTATAAACCTGGTTCCTATCACTCAGTACTGCTTTGTGTCAGTGACGTCCATCAATGGTAGGGGGCATGGGAAGAGCTCATTCTCGCTCTTTGCTTTGGCTTTGGAGTACATATGTGCGTGTATTCCTGTGTTTCTGCATGGTGCCATCCACTGACACCCTAGGTGGGGGCTTGGGGTGTGTGGTCTTCTCTTGGAACTTATCACGCTTTTTTCAGAGTGGGAATCTGGGAGAGGACTTTCTAGGGCATGAGTTCTGCAGATGATACAGGAGAACACTATGCTTCTGCTGGTGTTATGCCAGCTGTGCACACATACACACACATATGCACACACACACACACACACACACACACACACACACATGTGCACACTTGGGGGCCGAGTCTGGTTGCTCTGCATTAGCATAGACCCTTGGGATTGGCCGATTAATATTTTCAACTTGTCCTCTTTCCTCCCCCGCTTCTCCCCTGCCCCTTTTCTCTCAGTTCCCACAACACCAAACTGTCCATCATCCTTTTCCTACCATGCCTTTGCTTTTGTTGAGTCCTACTGGGACCTATTTCTCCATCACCTAACTGTCTGTGGACATTAACTGTTGGCACAGCTGACTGCATTGGTCTCAGAGGCCCCAGAGATGGTGAGAGCACTGTCTTTTCATCTCTGGATTCCAAGCTGTGGGACACTTATCAAGAATATCAGAGTCACTGGCGCATGTTTGATGGTTGAATATCTAACACCTGGCCACTATTACAAAGTCCTAGACATGTGACGTGTTCCCTTTCATAGCTGATAGGAGAAGGTAGCCATACTCTAGTTTGGCCTTTACAGTCATTTCCGCCTCTCATAATAAAGTCTTCCTAAGGGACCAGTCCATGGAGGCCTCCTGATTAACTCAGGCTAAGGGAGTGTCCAGTGATTGGTTGGGATCCTGTCCCAGGTGTCAGTGGTTTCTGGTCCCCATCCCCTCTCCTACTGCTAAGGACGCTGAGACCGTGTCAGTCAGCTTTCTGTTACTACGAAACATACCTGAGCGAGTCACTTATGAGGAAGAGAGGTCTGTGGTGACTCACGGCCTTGCAGGTTCCAGCCATGAGCAGTTGACCCCATGGCCTGCCTCTATGCCATCGGTGAGGCGGCTCTCACCATGGCAGGGAGTAAGTTGTGGGAAGAAAGATGCTTGCAGCTGGGAGGGAAACAAAGGACATTCATCACAGCCTACATAGCAAGACCTGCCTGAAGGTCGAGAGAGAGCAGGGGGAGGACATCCCAACCATGACGTAATCCCTCCAACTGGGTCCCACCTCTTAAAAGTCCCGCAGGCTTTCAATAATAGCACCACAGGCTGCAAACCAACTCCTTAAAATGTGGGACATTCAAGATCCCAAATGTAACAGAGACCCTGTCCCAGCCTCTTTGTGTGCTGAGCGTAGAAGAACCCCCTCTTTCAGGAGAGACTTCCATGGGAGTGTATCACAGTCTATACAGAGCGATGAGAACTTCAGTTCAACTACATGGGGAGATTGGGAACTGAGGGGAGGGAGACAGGCTGAGCTCAGCGAGGTATGGGGGAGAAATACAGTCTCCATTAGTGGCGGTATTGCCAGTCATTTGTAAGAAGTCTGATCTGGTGCTAGGGATGGTAGCATACTCACATGCAAGAAATGTGAAACCATGGTGTACATGCAGGCTTAGAAGCAGGTGGCTAAGAGACTGGGGTGCTCATACACACTGGCGTATGCATCTGAACATGCTCACACAGATGCATGGCTCACGGTGAATGACTGGGGGGCAGCCAAAGCTGCATCAGACAGGGTGAAACCCTACCTCAGTAGAGTGGCCGTGTTTCTCTTTTACCAAAAAAAAAAAAAAAAAAAAGCCAGGGCCAACAAAATGGCTCAGTGGGTAAAGGTGATTGCCACCAAGTCTGATGAGTAGAGTTCAGTCCCCCAGAAACCACATGGTGGGGAGAGCCAACTTCTACAAGTTGTCCACTGACCTCCGCATGTGCACACATGCATTCACACACTAAATAGATAAATATATAAAGTAAACAAGTAAATAATAGGGCTGGAGAGATGCCCCATTGGGCAAAAAGGCTTGCCATGAGAGCCTGACAACTTGAACCACAGTAGAGGGACAGAAGAATTTCCTGAATGCTGTACACACACACACACACACACACACACACACACACACACATAAATAAGTGCTATAAGAAACTCAAGTGCAGAAAAAGGCAAAAGGCAAAGTTTTATTAATATGTTCTCTCCCTAATAAACAGCCCTCCTCCTGTAGCCTGGGCTGACCTCGAACTCCCTTTTAGCTCAAGAAGGCTTTGAACCTCTGACCTCCCTGCCTCCACCACCCAAATGCCAAAACCACAGGCATGTACCACACAACACCAGGCCTAACTTTCTAGTCCTTAATCTGCACAGAGATTATGGAATTGGGGTGGGGCTTTTTACATAATATCAAAATAGAAGTTTACATATTATATCTTTTTCATATACGAGTTTCAACTTATGAAGGTTCTTTTCTGTATTCTTTTCTGGTTGTCATGGGATTTTGTTGTGGTTGTCATTGAGGGCTTTTGTTGTAGGTTTTGGTTTGGTTTGTTTTTCAAAACAAGATGTCACATATCCCAGGCTCTAAGGATGTCTTCGAGCCTTTAACCCCAGCACTTGGCAGGCAGAGGCAGGCAGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGCAAGTTCCAGAACAGCCATGGCTACACTCTACCTTGAAAAAAGTTAATAACTTTTGATCCCTCTGACTTCCAAGTTCTGAGATGACAAGCATGGCACACACACACACGCACTCAAGTGCACACACACAGACACACACACAGACACACACACACACACACACACACACACACACACACAGCACAGTGCTAGGCATTAAACCAAGACTTTGTGCACACTAGTCAAGCAGTCTACTGATTGAGCTAAGTTACATCTCCAGTCCACCAGATGTTCAAAACACAGTCTTGAGTGGCACAACCTTTTCTACAAGGCCTCCCTCCTTCCTATAAGTATCACTTCACTTTCACCCTTGTAAATAATACTCCTGTGAACCTTCTTCACAAAGACCCATGGACATATGTCGGTATCTCCAGGTCACAGAAGCATTCATGCTTTCAAGTCTATCTCCGGCAGCATGAAGGCATATGTGTGTGCCCATGGAGCACCCAGGTTTCTGAATATATACTGATTTCAGATTTGCATTTCATTTTTGCAACTTGGGTTTTATTTTTAATAGTTGTCTTACTTTAAATTTTCCTTCTTAGATTACTCACTGGGTTGTTTGTTTGCAAATGCTTATTGGTTGTGTTTTCTTTGAGTCCCTTTCAATTCTTATGTTCACCCTTGCTATTAGGGTTGCTTGCACTTTGCTTATTGATTTGTAAATGCTCTTTCCATATTAAGGACAACAACCACGTTCTATTGTATAAATTGCAAGTAGCTGCAAATTCATGCCTTTTAATTTGTGTTGATGTGTGATAATTTTTTGAGAACTTAAATTTATTAATCATTTTTTGTTTTTTGCCCCTATGATTAGAAAGACATAATTGTTGCCTATTGAGGTTTGGCTTTTTTTTTGTCATAGTTTGCTTTTTTCTGTAATTTTGTATTCATTCACCAAAGTCTTATTTATGAGAAATGACAGTTTGGAGTATGTAGGGAGTCCAGATTAAAATCTAGACTCTTGGTAAAATGCCGCTATATCTCTGGATATGGAGGTTCAGTACCTGCAGTCCTAGCTCAGGGGAGGAAGGAAGCTCACCATCAGTTTGAGGAGCTGAAGGCAGGCAGATCCCCAGGCTCCAGGACAAGCCAGCCTGGGCTAATGGTGAAGCACAGGACCCAGTGAGAAAGGCCATCTCAAAAAGAAACAAAACAATGTGAACAGCTTCTGAGAAAAAAATACCAAAATATTGGCCTCTGACCCACCCACACACTCACATACTCCCACGCAAACACATGCGCATACACACAGATATACAGATGTGTACACAGAGATACTCAAATGTGCACACAAAAAAAAACAAACGATCTTCAAAGGAAAGACATACTTCTGCTCTGGGTAAACACAAATGTATTCTCAAGTCCACACATGCACTTAACATCTATCCACACATACATGTATACACATGCACACACAGACACAGACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAGCACAGAAAACTGTACTCCGATTTTCGAATAATTGTGCACTCCTTGCCTCAGGGTGACTCAGAGTCACAGCCCAGAAGAGGCAAGGTTGTATGATCCCAAATTTGCAAAAGAACTAAGCTCCCCGACTCCGGGAGTGGGGGGAGGGATGCTCAGGCCACATGGGTTACACACCTGGGAAGGACAGCAAAGCATCAAAACCATTGCACTGCCCTAGAGTCATGGTATGAACTCAGCAGTCCCCAGATACCCTAGCTTAAAAGGGCTCAGAGTGGCTCTGCACCTGTCCCCAACAGGAATTGTGCACAAGATTAGACACAGCATCACTCCCCCACCCCACCCCAAGAAGGGAGGAGGAACGGTGCCAAGATACCTGTGCACATTGTAAGGGTGTGTGAGCCTTCTCTCAATATTTCCCTGCAGACAACCTGAGGCCACAAAGAGGACTTTCTTTTTTCCTGTTACAAGTCCTCGGGTCCTTCTGCTCTCCCACCGGCCATGGAGAATGTCCCTCGGTGACATCCATCTCTCCCGCACATGTGTGCATCCGCACAGTCATGTGCAGGAGAGCCTGTGTGCAAGATCTCACGACGGCAGAGATAACTAATTACCAGCTCCCTCTGGCCTCAGGGCCCCCATCTGTTCCAGGAACTGTTTCCCCCCTTCCTTGGACTTGCGCCCTGATCTCAGAGGGGCCCTAGTGCTCTCCTCTCCCCCACTCCCTGCGGCTGGCCAAAAAATAAAATAAAATGAAAATCAGCCCCATCCGGCCGATGCCAGGGAAGAGGCTGACAGGAGGTCTACAAACTAGCGCTTTATCAAAAGCGCCTTCTCAAATTCATTTCAATATCTGAGCCTCTGGTTTCCAAGGCAACATAATCTTTTCATCAAAGCAACTGGTAAAACCACTGGGATCTGATATTGTTTTGTTGGCAACTTGTCAAAACTGTCATTTGGTTTAAAAAAATGTTATAGATTTATGTAACCTACAAATATATATGGTGGACCATACCACTAATAATCACTAATGAAGTACTGCCCAGTAAAGCTCTCCCTGCTGCCTCTCTACCCCTTCCTGAGAAGGAAAGAGTGTAATTAGGTGGCAGGGAAGGGAGGTGACTAAGCAGGGGACAGGCTGGAGGGCTGGCTACAGCTCTAACAAGGCAAAGGCAGTCATTTGGTTTCTCCACAGAACCTCTCTCTTTGCATGTGGTCTTCCTGGGACCCCGAGTCCCTCGTTCTCCTTTCTCTGACTGCCTCTCACCATTTGCTCAGAATACCCATACGTGTTGGCCTGTAGCCACAGCCCCTAGAGCCTATATCACCGAGATGGGTACCAAGGTTGGCCAACCAATACTGCAGGACTGGCTCCATCAGCTCCTGAGGCCGAGCCCAGCACAGAGCTGTACGCTGTTCTCAGGCTGAGAAAGAACGTGCTGGACCGATCCTGCCCAAGGCACCGAAGACAATGGCAGGCGAGGGGCCAAGGCTTCTGTTTCATGGCATGACTTTGTCTCTGCCCACAG
Seq C2 exon
GCTCCCAGCGAGTACGAGACCAGTCCTGAACAGCTCTTCTACAGGATCGCCCATCTGAACCGGGGCCAGCAGTACTTGCTATGGGTGGCTGCGGTCACCTCTGCAGGCCGGGGGAACAGCAGCGAGAAGGTCACCATCGAGCCTGCTGGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016502:ENSRNOT00000022476:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.231
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(51.2=93.6)
A:
NA
C2:
PF0004116=fn3=PD(46.5=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]