GgaINT0138374 @ galGal4
Intron Retention
Gene
ENSGALG00000007314 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr24:5319756-5321562:-
Coord C1 exon
chr24:5321423-5321562
Coord A exon
chr24:5319910-5321422
Coord C2 exon
chr24:5319756-5319909
Length
1513 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
TCCTGGCTCCCCCCCTACAGGCC
3' ss Score
10.4
Exon sequences
Seq C1 exon
TTCCAGGTCCCCCAGCTGGCATCAAGGCTGTGCCATCCTCAGCCAGCAGCGTGGTGGTGTCCTGGCTGCCCCCAGCAAAGCCCAATGGCATCATCCGCAAGTACACCATCTTCTGCTCCAGCCCTGGCTCGGGGCAGCCG
Seq A exon
GTAAGGGCACGGCGATGGGGATGGGCTGCGGGTGGGTGCTGGGGAGCTGTGCAGCTTCTGGATGGAGGCAGAAATAGTGTTACAGGAACCTGCCTCATATGCTGCCAGAGGATGATGCAGGTGGTGCCATGCATCCAGCCTGTGGCAGCACAGGGGTGTCGAGGGCACCCTGGCGTGATCTGTGGGTCACCCGCCACCTCCCTCCAGTGTTCCCCCATCTCAACGCTCACTCCAGAATGGGAAACATGCAAGGAGCCGACCAAAAATAAAACATAAATTCAACCTGGTCCCATCCCTCCTTGGTGAGGGAGAGGTTGATGGGAGGTCTGCAGACTGGTGCTTATCAAAAGCTCCTTCTCAAACTCATTTCACTATCTGAGCCTCTGGTTTCCAGGGCAACATAATCTTTTCATCAAAGCAACTGGTAAAACCGCTGGGATCCGATATTGTTTTCCTGGCATCTTGTCAAAACTGTCATTTGGTTAAAAAAAATTATGTATACCATGCAATATTCATATAGGTGTCTGTTTGTGGGGTGCGTTCACATCTGTGGGCCCCACCAGGGTGCATGTTTGGAGACGATGAATGTGCAGATGCCCACGTGCGGCCCTGTGTGTGCACACAGAAGTAACACGTCCATCCCTCGTGGTGGCATCTCCATGGTCTCATCTCATGCCATGGTTGAGGCAGTGGGGAAGCACTTGAGGATGGCTCTCCCCAGTGTGGTATGCAGGAGATGTGGCCTTGATGCACGGCACACAGGCAGAGGGATTGTCTGCCTGCCACGGGGCTGGCAGCCGGGGCGCACCGAAGGGACCCCATGGGGCTGGGACATCTGTGGGCAGTGCTGGAGACCCTGCGGGACTTTGGGGACCCCATCACTGCCACCGCCATGCAGAAGGGTTTGGCTGCCCAGCTAGGGCCTGCCCTGTGCCCCACTGCAGCCCGGGGCGGTTGGGAAGCGTAATTTCTCCGGAACAAATCATGCCGTCGCTGCCATCTGTTCCTCACACACTGGTCTGGGCTCCCTGGAGAAATTACGACACCAGCCGGCTTACACCGGCATTAAGAAACACTGAGCAGAACCGAGCTGCTGCTGGGGAGCAAACCCACAGCACCTCGAGGAGGTGTGCTGCTGGAGAGCTGGGTGGGGCGATGGGGCAGTTGGGCAATGGGACAGTGCAGCACCTTCTGCCGTCTGCCAAGTGATGGGTGCGGGGCTTAAGCCTGATGGCCTTGGGGATACCTTGGGTATGGGAGTGATGGTGGTGCACTGAGTACCAGGGCAGAGGAGATGCTGAGTGGTAGCGATGCCCGGAGTATCATGCTGGTGGGGATGCCTGGATGCAGGCAGATGGCCCAAGGATGAATTTTCCCAGCTGACAGCTCAGGTGCTGCTCAGACAGTTTTGCTCACGCTAATGCTGTTCTCTCAGTGTCTGTGTGCCCAGGATGAAGGCTGTGTCAGTGAGGCTCTAATAGACCCATGCCTTCTCCTGGCTCCCCCCCTACAG
Seq C2 exon
GCCCCCAGTGAGTACGAGACCAGCCCTGACCAGCTCTTCTACCGCATTGCACACCTGAACCGTGGGCAGCAGTACATGCTGTGGGTGGCTGCTGTCACCTCTGCGGGCCGTGGCAACATCAGTGAGAAAGTCACCATCGAGCCTGCTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007314:ENSGALT00000011835:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(51.2=93.6)
A:
NA
C2:
PF0004116=fn3=PD(46.5=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCCAGCTGGCATCAAG
R:
CTTTCCCAGCAGGCTCGATG
Band lengths:
287-1800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]