MmuINT0053388 @ mm9
Intron Retention
Gene
ENSMUSG00000032087 | Dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:MGI Symbol;Acc:MGI:2150309]
Coordinates
chr9:45540110-45548716:+
Coord C1 exon
chr9:45540110-45540249
Coord A exon
chr9:45540250-45548562
Coord C2 exon
chr9:45548563-45548716
Length
8313 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
GACTTTGTCTCCGCCCACAGGCT
3' ss Score
10.88
Exon sequences
Seq C1 exon
TTCCAGGCCCCCCTGCTGGCATCAAAGCTGTCCCTTCATCAGCTAGCAGTGTGGTCGTGTCCTGGCTGCCCCCAACCAAGCCCAATGGGGTGATCCGCAAATACACCATCTTCTGTTCCAGCCCTGGGTCCGGTCAGCCG
Seq A exon
GTAAGTGGTAGGGGGACAAGGGAGCAGATCTTTGAGGAACAACCTGTCAGTCAAACTGTGGGACTTACCTATACTTTTCTGTGACTTATAGTTCAGAATGGGTGCTGGACAAGATGGCTCACTGGGTGAAGGTTGCCAACTGTTAAACTCGAGGACCTGAGACTAAGCCCTAAGCCCTGAGTCTAAAGCCTGGGACCCACACAATAGGAGATAACCTATATCTGCAAGTTGCTTTTAAACACTACACACACACACACACACACACACACACACACACACCATGATATGTATTTTAAGTATGGGTACTGGCTACTCCAAAATGGATGAACCTTTGTGTGCTATCATCCATCATGGGCCCGGCATCTGCCACAGACACTGCAAGCTTGTCACAGCTTGGGAGCTCCTCTTGAATCATGTGGGTCACAACCAAGCAGACAGAGAAAAAGAGAAACCACTCAACTCTGCTCTTCCAGCCTGCTGACCACAGGCACTCCCAGGGACTGGCTGTTCCGTGGACTCTGGGAGTGCATGGTCTCTCATCAGGGTCCTCCAGGTTGGGAGTCAAATGCTGGGCATCTACCACAGGTGACTGCCACAGTGTGGAGTTATGCAAGGAGGATGGGTGGGAGTGGGATATGGGTAGGGGAATCTCTGACCAGGGCCTGGGCTTCCATCGGGACAAGAGACTAAGAGTCTGCAGTATCTTCCCTGATCCTGGCTGATGTGCACCCCAGGCAGAGGTATAAGCACAAGTCAGACTTCTACTGGGAATTCAGAGTCCCCAGAGAGAAGAAAGAGAGGATGGGGTGGGCAAAGCATTGCATATGCCCACACCCCATAATATGCTTCCTTCCCCTCTCCTTTTCTGATACCCAGCTAAGTAGCTTCTCTGCAGCACACATATTCCTCAGACAGGAGCAGGTGGAAACCCCTGCCCTGGGCAGCTTCAGCGATGGGAAACAGCCTATAAGAACATCTCGGGGGCAGGGCTGTCAGGGCTTAGGGCTGGGGAAAGGGCAGGAGGAAGTGTTGTCCTCTATAATGGCAGCTCTCCATCAGCCACAGATCTGCATGAGCTCTGAGCCAGGAATGCTGCCTGTAGCTGCCGGGCCACTGTCATCCCTTCCCTCGTCAGATTTCCTGTGGGCTTTGTAAACCACCCTTCTGGAGTGAGCACCACAGCTCCTTGCCGTGGAGGCCAAGAGTCTCTTCCCAGAGAGAAAGCCCATTGGTTCATAAGCATCCTCACTGTCCTCGTGGGCACTGCCACATGCAACATAATGTTGGCAGCATGCCCATATGGTGGCACTCAGACGGAGCATAGGACATTAGAGCACCCCAAAGACCATCTGATGTTTCTCCATTACCACCACCCTCCCAACTCCACAGCTTGGATGAATGCTACCTCTTTCAGCCATCAGTGCGGGTGGAGCCCTGCTATACATCTGGCTCCTGTCACTCAGCCCTGCTTTGTGTCAGTGGCTTTCATCAGTGGTATGGGACACTGGTAGAGCTCATTCTCTCTCTTCTCTTTGGCTTTAGAGTGTATGTGTTGTTTATGCTTGTATTCCTGTGTTTCTGCATGGTGCTGTCCACTGACATTCTAGGTGGAGGCTTGGGCTGGGAGCTCTTGGAGCTCATGACACTTTTTGCAGAGTGAGTATCTGGGAGAGGACTTGCTGGAACATAGGGTCTGCAGATGATACCTAAGAACACTACGCTTCTGCTGGTGTTATGCCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGCACACACATGCCAGTGCATGGGCCATTTGCACACTTGGGGACTGAACCTAGTTGCCCCACATTAGCGTAGACCCTTGGGATTAACCAATTAATGTTTTCAACATGTCTTCTGCCCCCCCTGCCTGTTTTCTCTCAGTTCTCACAGCACCAAACTGCCCACTAGCCTTTTCCTAACCCTGCTTTTGCCTTTGTTGAGTCCTACTGGGACCTATTTCTCCATCACCCAAATGCCTACGGGACATTAACTGTTGGCACAGCTGACTGTTTTGGTCTCAGAGGCCCCAAAGACCATGGGAGCAAGGTCTTTTCGCCTCTGGATTCCAGGCTGTGGAGCACTTATCAAGAATATTAGAATTGCTGGTGCATGTTTGGTGGTTGAATATCTAACAGCCTGGCCACTATTATAAAGCCCTAGACATGTGGCATGTCCCCTTTTCTAGATGATGGGAGAAAGGTAGCCATGCTCTCGCTTGGCCTTTACAGTCATCTCTGCTTCCAATAATGAAGTCTTCCTAAGGGACCAGTCTGTGGTGGCCTCCTGATTAATTCAGGCGTTGGGAGTGTCTAGTGATTGGTTTGGATCCTGTCCCAGCTGTCAACAACATTTCTGGTCCCCGTCCCCTCTCCTACTGCTAAGGACACTGGAACTGCATCAGTTGGCTTTCCATTACTATGAAGAATACCTGAGAGAGTCAATTCTAAAGAGGAGAGATCTGTCCTGACTCACGGCTTTGCAGGTTTCAGCCATGAGCAGTTGACCCCACAGCCTGCCTCTGTGCCGGTGGTGAGGGGCCTCACCATGGCAGGGAGTAAAATGCTCACAGCTGAGAGGTAAATAAAAGACATTCATTGACACCTACATAGCAAGAGGAAGGACATGCTCCCAATGACTTCGCTCCCTCCAACTGGATCCCACCTCTTAAAAGTTCCACGGGCTTCCAATAATAGCACCACAGGCTGGACGCCAAGCCCTTAAAACGTGGGACATTCAAGATCCCAAATGCAGCAGAGACCCTGTCCCAGCTCTTTGTGTCCTGAGCATATAAGAACCCCCTCTTTCAGGGAAGACTTCCATGGGAGTGTATCACACAACGTTTATACAAAGTGATGAGAATTTCAGTTCAACTACACTAGACTGAGGACTGAGGGGAGGAAGATACTCTGAGCTCAGTGAGGTCTGTGGGGAGAGCTGCCATGGGAAATAGTATCACTCTGCATAAAACAGTCCATATTTAAAGTGGCTGTGTTACCAGTTATTTAAGAGAGGAAGTCTGGTCAGGCGCTAGGGATGATAGCACACTCACATACAAGAAACATGTGAAACCATGGTGTAAATTCAGGCTTAGAAGCAGGTGGCTAAGAGACTGGGTGTTCTCTTACATACTGATGTGTGCATCTGAACATGCCAACGCAGATACATGGCTCACGGTGAATGACTGGGGTCAGCCAAAGCTGCATCAGACAGGGTGAAAACTCTACCCAATACTTTGTTCAGTACAGTGGCCGTGTTTCTCTTTTTACAAAAATAATAGCCAGGGCCAACGAGATGACTCAGTGGGTAAAGGTGATTGCCACCAAGTCTGATGAGCTGAGTTCAATCCCTGCAGAAACCACATGGTGGGGAGAATCAACTTCTACAAGTTGTCCCCTGACCTCTATGTGTGCACACATGCATTCTCACACTAAGTGGATAAATATATAAAATAAACAAGTAAATAACAAGGCTGGAGAGATGCCACATTGGACAAAAGGGCTTGCCATAAGTTAGATTAATCTAACAACCTGAGTTAGAACCCACAGAAGAATGAGAGAACAGTTTCCTGAATGCTATCCTCTGACCTACACACACACACACACACACACACACACACACACACACACACACGTCTATGAACATATCCATACATAAATAAGTGCTATAAGAAACTCCTTCAAGTGCAGAAAAAGACAAGAGACAAAGTTATGTTACTGGGTTCTCTCCTTTTTTTATTAGATATTTTCTTTATTTACATTTCAAATGCTATCACGAAAGTTCCCTATACCCTCCTTCCTCCCTGCTCCCCTACCCACCCACTCCCACTTCTTGACCCTGGCGTTCCCCTGTACTGTGGCATATCAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAGTGATGGCCAACTAGGCCATCTTCTGATACATATGCAGCTAGAGACATGAACTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGTAGACCCCTTCAGCTCCTTGGGTGCTTTCTCTAGCTTCTCCATTGGGGGCCCTGTATTCCATCTTATAGATGACTGTGAGCATCCACTTCTGTATTTGCCCGGCACTGGCATAGCCTCATACGAGACAGCTATACCAGGGTCCCTTCAGCAAAATCTTGCTGGCATATGCAATAGTGTGGTGGTGCACGCCGGTAGGATTTGCTGAAGGAGGCACAGGCAGGAGGATCACGAGTTCTGGGTTCTCTCCTTAGTCAACAGTCCTCCAGGGTTTGGGGAGGATGACATAAGACAGGGTTCCCTGTAGCCTAGGCTGACCTCACATTCCCTTTGGGCCTCTGACCTCCCTGCCTCCACCTCCCAAGTGCTGAAACCACAGACATGTACACAACACCAGGCCTAACCTTCTACATTGATCAGCACAGAGGTTATGGGATTGGAGTGGGGTTTTTTTACGTATATTAAAATAAAAATTTACATGTATGTCTTTTTTATATACAAGTTCCAACTTATGTTTCTTTTCTGTGTTCTTTTGTGGTTTTCGTGGGATTTTTTTTGTTGTCATTGAGGGGCTTTGTTGTTATTTTTGTTTAGTTTTTTTGTTTGTTTTTTGAAACAAGATTTCACATATCCCAGGCTCTAAGGATGATCTTAGAGGCTTTAATCCCAGCACTCGAGAGGCAGAGGCAGGCAGATCTCTGAGTTCGAGGACAGCCTGGTCTACAAATCAAGTTCCAGAGCAGCCAGGGTTATACAGAGAAACCCTGTCTTGAAAACATTAGCAAGTTTTATCCCTCTGCCCTCTGAGATGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGCCATCAGAAACACACACAGACACACACAGAGACACACACACAGAGACACACACGCACAGAGACACACACAGAGACTCACACACAGACACACCAGAGTTAGCACAGTGCTAGGAATTAAACCAAGGCTTTGTGCACACACTAATCATGCAGTCTTCCGACTGAGCTAAGCTACATCTTTCTCTCCAGCCTACCAGATGTTCCAAACACACTCTTGAGTGGCTCAACTACTCTCCACAAGGCCTCCCTCCTGCCTATAAGCATTGCTCCACTTTCACCCTTGTAAAGAATACTCCGGTGAACCTTCTGCACAAAGCTTCATGGACATATGTCAGTATTTCCGGGTCACAGAGGCCCTGCATGCATGCTTTCAAGTGGCTCTCCAGAAGCACGAAGGCATGTGTGTGTGCCACAGAGCACCCAGGTTTCTGAATATACACTGATTTCAGATTTGCAATTCATTTTTGCCACTTGGATTTTATTTTTAATAGTTGTCTTACTTTAAATTTTTCTTCTTAGATTACTTATCAGGTTGTTTGTTTGCAAATGCTTATTGGTTGTCTTTTCTTGGAGTCACTTTCAATTCTTGTGTTCATCCTGGCTATTTGAGTTGCTTGCACTTTGCTTATTGATTTGTAAATGTTCTTTCCATATTAAGGATAACAACTATGTTCTAGTGTATAAATTGCAAGTAGCTGCAAATTCATGCATTTTAATTTTATTGATGTATGATAATTTTATTAGAGAACTTAAATTTATCAGTCCTTTTTTTGTTTGGTTTGGTTTTGAAGCCTCTATGATTAGAAAGACATATAATTGTTGCCTATTGGGGTTTTTTTGTCATAGTTTGCTTTTTGTTCTATAACTTTGTGTTCACCAAGTCTTATTTAGGAGAAATGACAGTATGGTTTTAAAAGAATTTCAAGGGATTTGTAGGGAGTCCAGATTAAAAGAAAGGTACTAAAATCTTGGTAAAATGCTGCCATCTCTCTGAATGTGGTGGTTTGGTACCTATAGTCCTAGAATCTTGGTAAAATGCCATTATATCTCTGGATGCAGAGATTCAACGCCTGCAGTCTAGCTCGGGGAGACTGAGACAGGAGGCAGTCATCAGTCTGAGGATCTGAAGGCCAGCAGATTCCTGGACTCCTGGACAAGCCAGCCTCGGCTAATGGTGAAGCCCAGGACCCAGTGAGAAACTCCATCTCAGCCAGAACACACAACAATGTGCACAGCTTCTGAGAAAAAAATACCGAAGTATTGGCCTCTGACCCACACACATACTCACATACTCCCACACAAACGTGTGAGAATACACACAGATATAGACATGCACACACACACACATATGCAAATGTGCACACACACACACACACACAAAGAAAATGACCTTTTAGCAAAAGACATACTTTCCTGCCCTAGGTAAACACAAATGTAGTCTCAAGTTCACACTGACACACAAGCACAATGCACTTACTATCTACCTGCACATATATGTATATGCACACACAAGCATGCATGTGTGCACACATACACACACACAGACAGACACACACACCCAGACACACAGACACACACAGACATACACAGAGACACACACACACTCACACACACACAGAGACACACACACACTCACACACACACAGAGACACACACAGAGAGAGACACACACACACAGAGACACACTCCATCAGAGACACACACACACACAGACATACACACACACACAGAGACACACACGCAGACACACACACACACACCCAGACACACAGAGACACACACACACACTCACATACACACACACCCAGACACACAGACACACACAGACATACACAGAGACACACACACACAAACACACACCTCTACACCCACAGAAAATGAGCACAGAGAACTGCACTCTAATTTTCAAAGAATTGTGCACTCCTTGCCTCTGGGTGACTCAGCGTCACAGCCCAGAAGAGACAAGGTTGTAGATTCCTAATTTGCAAAAGAACTAAGCTCCCCAATCTGTTGGGAGGAAGAGCTCAGGCCACACGGGTTCCCTGCCTGGTAAGGACAGCAAGCACCCTGGGCATGGCACCGCCCTCCAGTCTTGCACTGTCGTGAACTCACCAGTCCCCAGATGCCCTAGCCCAAAAGGGCTCAGAGTGGCTCTGCACCTGTCCCCAACAGGAACTGTGCACAAGGTTAGTCACAGCATCACTCGCCCACCCCTCCTGGGGAAGGCAGGAAGGACGGTGATGAGATACCTGCTCACATTATAAGGATATATGTACCTTCTCCCATCATTTCCCTGCAGACAGCCTGAGGCCAAGAAAAGGACGTTCCTTTTGTCCTGTTACAAGTCCTTGGGTCCTTCAGCTCTCCCATTGGCCATGGAGAATGTCCCTCGGTGACATCTATCTCTCAGCACATGTGTGCATCCGCACAGCCATGTGCAGGAGAGCCTGTGTTGCAAGATCTCACGACTGCAGAGATAACTAATTACCAGCTCCCTCTGGCCTCAGGGCCCCCATCTGTTCCAGGAACTGTTCCCCCTCCTTGGACTTGCGCCCTGATCTCAGAGGGGCCCTAGTGCTCTCCTCTCCCCCATTCCCTGCGGCTGGCCAAAAAAATAAAATAAAATAAAATGAAAGTCAGCCCCATCCGGCCGATGCCAAGGAAGAGGCTGACAGGAGGGCTACAAACTAGCGCTTATCAAAAGCGCCTTCTCAAATTCATTTCAATATCTGAGCCTCTGGTTTCCAAGGCAACATAATCTTTTCATCAAAGCAACTGGTGAAACCACTGGGATCTGATATTGTTTTGTTGGCAACTTGTCAAAACTGTCATTTGGTTAAAAAAATGTTATAGATTTATGTAACCTACAAATATATATAGCGATCCATACTACTAATAATCACTAATAAAGTACTGCCCAGTACAACTCTCCCCACTGCCTCTCTACCCCATCCTGAGAAGGAAAGAGTGTAATTAGGTGGCAGGGCGGGGAGGTGACTAGGCAGGGGACAGGCTGGAGGGCTGGCTACAGCCCTAACAAGGCAAAGGCAGTCATTTGGCTTCTCCACAGAACCTTTCTCTTTGCATGTGGTCTTCCTGGGACCCCAAGTCCCTCATTCTCCTTTCTCTGACTGCCTCTCATCATTTACTCAAAATACCCATATGTGTTGGCCTGTAGCCACAGCTACTAAAGCCTATATAACCGAGAGGGGTACCAAGGTTGGCCTACAAATACTGCAGGACTAGCTCCATCAGCTCCCGGGGTTGAGCCCAGCACAGTACTGTCCACTGCCTTTCTCAGGCTGGGAAAGAGCGTGCTGGACAGATCCTGTCCAAGGACACCAAGGACAATGGCAGGCAAGGGGCCAAGGCACGGTTTCTGTTTCATAGTGTGACTTTGTCTCCGCCCACAG
Seq C2 exon
GCTCCCAGCGAGTACGAGACCAGTCCTGAACAGCTCTTCTACCGGATCGCCCACCTGAACCGGGGACAGCAGTACTTGCTATGGGTGGCTGCGGTCACCTCTGCAGGCAGGGGGAACAGCAGCGAGAAGGTCACCATTGAACCTGCTGGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032087-Dscaml1:NM_001081270:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(51.2=93.6)
A:
NA
C2:
PF0004116=fn3=PD(46.5=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: