HsaINT0052358 @ hg19
Intron Retention
Gene
ENSG00000177103 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:14656]
Coordinates
chr11:117314602-117321404:-
Coord C1 exon
chr11:117321265-117321404
Coord A exon
chr11:117314756-117321264
Coord C2 exon
chr11:117314602-117314755
Length
6509 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
TCTTTGCCTCTGCCCCGCAGGCT
3' ss Score
10.39
Exon sequences
Seq C1 exon
TTCCAGGTCCCCCTGCTGGCATCAAAGCTGTCCCTTCATCAGCTAGCAGTGTGGTTGTGTCTTGGCTCCCCCCTACCAAGCCCAACGGGGTGATCCGCAAGTACACCATCTTCTGTTCCAGCCCCGGGTCTGGCCAGCCG
Seq A exon
GTAAGTGAGTTCAGGGCCAGATGATGAAGGGGATGGAAGAAAAGAAAAGGGACCTTGTACATCAGCCGGCTTCCAGGCCAAACCCTGAGGCTGCCTGTATCTGAGCTTCTGCCTGGATTCATAGATAAGAATGGGGACTGGCCACCCAGAGTGGCCGAAGCCTTACTCAGTGTCCATCTTGGGTCAGTCCTCTGTTCCAGAGGCCACAAGATTGTCACAAACACTGGGGGCTCTTTTGAGTCAGGTGGGCCATGCCCAACCAGGCAGGGTGGAAGGGAGGTCAGCCTCGGCTCTTCTGCTCTGGCTCAGAGGAAGCTCCCAGCAGGTCCCCAGGCTGGTCTGTGCCCTCTGGGAATGAACCATCTTTCAACATGGTTGGTCTGGGCTTGGAGGTGCTGTTGGAGCTCTGCCCTGCATAAGCGCCTCCACATGGAGCAAGCTGAGGGAGGAGGAAAGACGGGGGAAAGCCGAGAGAAGGCACAGGCGTCTCTCGACCAGGGCCTGGGCTCAGGCGAGAGGAGAGGATTGAGAGGCTGCGATATCTGCCCTAACCCTGGGAGCAGAGGGGGCAGCCCCCAGGCAGGACATAGGGCAAGGGGCTAGCCGCCCTTCCACTGATGCTCTGAGGGGCCCCACAGAGAGGGAAGGGAGGATGGGGATGGGTGCAGTGGGATATGCACCTATATCCCATCATATGTATTTTCCCCTCTGCCTCTTTCATCATCTCCAGCCAGTCAACCACCAAGTCCTGCTGAGTGACTACTATAGAGAATGCCTGTTCTAGGTACGGGAGCAGGAGCAGATACCTGCCCTCAAGGGGCTTCCAGTCTAGTGGAGGTGGATGGCAGAGGGGAGCACACTAGAGGGGCAGGAGTACTGTCAGGAAGATGTGCCCAGGGCTGGAAGCAAGGAACGGAAGCAAGGAGCAGAAGCAGGAGCAGGAGGCCTGCTCCTCCCTCCATCAACAACTGGGCATCAGCCTGAGATCTGCAGATAAGCTTATGGCCACCAGGAAAGCTGCCCTGAAATTGCTCAGTAATTGTGTCATCATCTCCTCCTATACTCTCTGCTTTCCTGTGGTCTTTCTGAATTACCCTCTGAGTGGTAGGTGGCCCAGCTCCCCGCCAGTGAGACCAGAGTTCTATTACCAGAGGGGAAGCCCACTGACTGCGGCCCCCCACTCCATCCTCACGGCCACTACCTCACATGCAGCAAAGTGCACAAACGTCATCACTGTAGACCTCCGCGAATTTTCACAACCCACCCAAGCAGCAGCGCCCAGAGCACAGAACAGGACATTACAACACCCTGAATCCCCATGCCCCCTTCCAGCTCCCGCCTGCCCCTCCTCCCAGGTAACCATCATCCTGACCTCAATAGCATAGATTAGTGCTGCTTCTTTTTGTACTTTGTGTAAATGGAATCATACCATTTGTCCAGCTTCTTTTACCCAACATTATTTTGAATTCCTGAATTTCATTCGCGTTGTTGTATGTGGTTATAGCTCATTCATTCTTCTGTATAGCTTTTGTGTGCATATGTTATGATTATTAATCCATTGGGCTAGCCGTTAGTATCCATTGATGGAAGGCTTTGGGGCAGTTTTCAGTTTGGAACTCTTCAAATGGTGCTGCTGTGAACATTCCTGTATGTGTCTCTGGGTGCTCATGGGCATGGATCTCTGCCAGGTGTACGCCTAGGAGAGGAAGCGCTAGGTCACAGAGTTTGCAGGTGTTCACTGAGAACAGCCTGCCATTGTTGGGTGCTCATGCCAATCACACCCCCACTCACAGGGGATAAGAGTTCCAGTGACTCCACATCAGCACAGACACTTGGTGTGTTTTGGGCAATGCTTTCAGCCATGTGTCCTGCTCTGTTTTCCCGTCTCCCCCCAACTCTACCCACCCCCCACACACACACACACATTCTAGGCTCTCAGGACACTAAGCTGTTCACAATTCTGGACAATACTGTGCCTCTTCACACCTCCACACCTTTGCCCCGCGGCTTCTTCCCGTGGCACGTTCCTCACTCCCGTCAGACACTGAATGCATTTGAAGGCAGTCACTGTTCACATATCTGTCTCCCACCCTGGTTTCTGAGGCCCCCACGAGGACAGGGGCAGCATCTTTTCATCTTTGGGTCCCCAGAGGCTGAACACTGTGCCTGGAACATCCTGGTCATGGAATACACATTCGAAGAATGAATCGGTAGCAGCCTAGCAATTCTATAGCCTCAGATATTGGGCAAGCTTCTGTTCCTTAATTGGTGGGAGAGGGTAGTCATTCTCTAGCCTGGACTTTTGCAGTCATTTCCTCCTCTGATAATGAAGTCTTTCCAAGGTTGGTGTCCGGGAGCCACGCCTCCTCACTAACTCAGGCTTCAGGCTCCTCTCCCGGGCTCCGGAACAGAGCTCCTGGTCCCCGTCCCCTCCTCCTGCTGATGGAGACATTGGGACCCTCCCTCCATCTTCTTCATGTCTTGCGATTTGCCATCAGACAGTATCACACAAGTCCTGCTGATGTGATGAGAACTTCAGTTCAGCCCTGTAGGGGGACTGGGGTCAAAGGTTGGGGGGAAACTGAACTTAGTGAGGGACCTGGGGACCTAACCACTGTGTGTGACGTGATCACTTTGCACAAATATATTCCAAATTCCAAACAATTTCAACACAAACTCATTTATGAAAGACAGCTCTGGGAGAGGGTGCTAGGGGTGAGGGCACACGCGCGTATCAGTGACAGTGCAAAACTGTGGCATGAGCCTGGAATTATAGGCAGATACCTGAGACTGTGTGTGCTCACACATGCTGGCGGGAGCGGATGAACCATACCTGTGGCATCCTCAGAAAAGACTGTGTATGGCCTTGGCTCTAGGGAAGCTACCCCTGGGGATGGCCACAGCTACACTGAATCCTGGTAGACATTTTACTAATAATATAATACATTTTTCACTGATTATAAAAATAATGCAATTTTATTATAGAAAATCTGTAAAACATATAAAAGAATAGAGAGGAAAGTAAAAATTACTTGTACTTCCTACAGATAAACACTGGTGATGTACTTCCTACAGATAAACACTGGTATATAGTCTTCCAGTCTTTGATCTGTACACATAGTACAGGTTTTGAGGTGTTTCATTAAACCAAATTAAAATAATATTATACATAACGTAATGCAATCTGCTTTTTTCATGGAATACCTGTTGGTGCTTTCCTACACCATCAGATATTCTTCTAAAACATTTTTTCGTGTGTATGTGACGGAGCCCTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACCATCTCAGCTCGCTGTATCCTCCACCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGGAGCTGAGATTACAGGCACACATCACCACGCCTGGCTAATATTTGTATTTTTGTAGAGGCAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGTGATCCGCCCTCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCACCGCACCTGACCTAAAACATGATCTTGAGTGGCTGTTTATACAGAATCTACTTAACCAGTCTCCCATTGTTCTGTATTTAATGTGTCTTTGAAATTTTCACCATTATAAATTACGTCTCAATGAACATCCTTCACAGAAATCTTTATGCACATATTTTAATATTTTCTTAGGGTAAATTTCTATAGGAATTCCTGGGTCACAAAGAATAAGTATTCTTAAAGTTCTGCATACAGACTTACAAATTGCCCTTCGGAGCATTTGCACCCATGTATGTTTCTACCAGCAGGGTGAGTGGCCAACAGTATTGTCCTTTGCACCTATGCTGATCCCACATTTGTTTTCTGATTTGTTCTGCTTTATTTTTGTTAGATGGATTTTTTATAAATGTGCCTTATTTTAAAGTACCTTTCTTTGGTTACTAGTTAGGTTGTATATGTTTATTGGCTATATTTTTCTTCTTTGGGTAATTGTCAATTTACGTCCTTTGTCCAGGTTTCTGTTTGGGTTTCTCATATTTTTCTTATTGATTTATAAGTGTTCTTTACATATTAAGGATAATAGCCATTTTCTGTCATATAAGTTGCAAGTATCTGCCAATTCATTGCTTTCCTATTGATTCTGGTTTTTTGTTTTTGTTTTTGTTTTTGTTTTGAGACAGAGTTTCACTCTTATTGCCCAGGCTGGAGTGCAATGGCACAATCTCAGCTCACTGCAGCCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAACTGGGATTATAGGCATGCGCCACCACGCCTGGCTAATTTTGTATTTTTTAGTAGAGAGGGGATTTCACCATGTTAGTCAGGCTGGTCTCAAACTCCTGATCTCAGGTGATCCACCTGCCTTGGCCTCCCACAGTGCTGGGATTACAGATGTGAGCCAGTATGCCCAGCCTTTGATTCTGTTTTTGATGTATCATAGTTTTTCTTTTTACAGAAGCTGAATTTATCAATCATTTCCATTTATGATTTTGCCTTGATTTTTATGATTAGAAAAATGGGTAAATATTTACCTATAGTTTCTTCTTTCATAGCTTGCCTTTTTTCAAAAACCTTTGATCCACTGGAACTTTATTTGGGGCTATGTCTGTGTGCTTTTGAACATGATTTCAGGAGACTCACGGGGTGTCCAGGTTAAAAGGAAAGCGCCCAGTATCTGGGTTGGATGCTAATACCTACAAGAAGAGGCCAAACTTTCTTGCCCTGCCTGTGTAGGCACAAATATACACTCAGGTATACACTGATGCACACAAGCACATACACTCAGCTGTTCTCCACACATGCACATGTACATAGAAACACATACGTTCCTGTACTGTCACCAAAAACAAGCCCGGAGAAGAATATGTCCTAGTTTACAAAGGACGTGCACACCCCTGCCTCCTTGTGCCTCAGTCACACACAGGTTGGGCAGAGCTGTATTGCTTCCCTAGTTTGCAAGAGAGAAAACAGCGTCCAGAAACTATGGGCAACCTTACGGGCTGTATGCCCAGGAGGAAGGGCAGGAGGGTGTTGAAGCCACTACACTACCCCACACTTCAAGCACATATCAACGACAGATACGCACACCAGTCCCAGGGTGCTGTGGCCTGAAAGGGCTTCCCAACCACCAGGGCTCAAGGGTGGCTCTGCACCTGCCCCCCCGGACCTCCTGGATTCAAGGCCAGACCCCCACGAGGGAGGCAGGAGGAATATGCCAGGGAGCTGTGTGTGTGTGTTGCAGAGATGCCTGTGCCTTTTCCCCTAACATTTCCCTGCAGATGGCCTGGGGCCAAAAAGGATGTCTCCTCCTGTTATAAGTTATTGGGCCTCTCAGCCCCACTATGGGGCATGAAGAATGTCCCTCTGTGCCCATACATGCCTGGAGGTCTGTTCCTCAGCATGTGTGCATGCGTCTACATGTGTGTGTGCTTGTGAGCGTGTGTGTGCAAGATCCTGTGACTGCAGAGATAACTAATTATTAGCTCCCTCTGGCCTCGGGCCCCCATCTGTTCTGGGGCTGCTCTCCCTCCCTGGACTTCCGCTCTGTTTTCAAAGGGGCCCTGGTGCTGTCCTCCTCTCCCTTCCCTGCGGCTGACCAAAAAATAAAATAAAATGAAAGTCAGCCCCATCCCGCCCGTGCCAGGGAAGAGGCTGACAGGAGGTCTGCAAACTAGCGCTTATCAAAAGCTCCTTCTCAAATTCATTTCAATATCTGAGCCTCTGGTTTCCAAGGCAACATAATCTTTTCATCAAAGCAACTGGTAAAACCACTGGGATCCGATATTGTTTTGTTGGCAACTTGTCAAAACTGTCATTTTGTTAAAAAAAATTTTATAGATTTGTATAACCTACAAATATATATGGTGATCTATACCACTAATAATCATTAATAAAGTGCTACCCAGTAAAGCTTTCATAGTTCCTTCTCCCGCCCCCTCCTCCCTGGACGGGCGGGCGTGCTGCCTGCAAAATGCAGGAGTGGTAATTAGACGGCAGGGCTAGGAGGTGACGGGAGCCAGAGCAGGCTGCAGGAGCCTGTCTCCAACCCTCATCAGGCAGAGGCAGTCATTTGCCTTCTTCCTGAAGACTCTTTCCTCAGGGCTTTCCTGGGACCCCCTGTCCCCCATTCTCCCTTCTCCTGGCTACCCCGTCCCTCACCTAAAGTACTCACATCCCCTGGCCTGAGCCACAGCTGCCAGAGCGTGGATCAGTTAAAGAGGTAAACTGAGGCTGACCCAGCAACACCGCGAGGCAGGCCCATCAGCTCCCAGGGACCAAACCCAGGGCACACTCTGTCCGCTGCATCTCTAAAACTTGGAAAGGGCAAATAGGACAGAATCCTGCCTCGCATCCGACCCCGCCATCCTCTCCTCTGAGCCCCGGGCACTGAGGAAGATTTGGACGCTGGAGGGCCCCAGTTCTGCTTCTTAGAGCCTCTTTGCCTCTGCCCCGCAG
Seq C2 exon
GCTCCCAGCGAGTACGAGACGAGTCCAGAGCAGCTCTTCTACCGGATCGCCCACCTAAACCGCGGTCAGCAGTATCTGCTGTGGGTGGCCGCCGTCACCTCTGCCGGCCGGGGCAACAGCAGCGAGAAGGTGACCATCGAGCCTGCTGGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177103-DSCAML1:NM_020693:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.231
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(51.2=93.6)
A:
NA
C2:
PF0004116=fn3=PD(46.5=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)