BtaINT0052964 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015106 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr23:47670503-47677746:-
Coord C1 exon
chr23:47675452-47677746
Coord A exon
chr23:47674480-47675451
Coord C2 exon
chr23:47670503-47674479
Length
972 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTC
5' ss Score
6.35
3' ss Seq
TCTTTCTTTTTGCATTTTAGGCA
3' ss Score
11.12
Exon sequences
Seq C1 exon
CTGAAAAATACCAAGATCGAAGTTCTGGAGGAGGAGCTCAGGCTGGCCCGAGACGCCAACTCGGAGAACTGCAATAAGAACAAATTCCTGGATCAGAACCTGCAGAAATACCAGGCGGAGTGCTCCCAGTTCAAAGCTAAGCTCGTGAGCCTGGAGGAGCTGAAGAGACAGGCCGAGCTGGACGGCAAGTCGGCCAAGCAAAACCTAGACAAGTGCTACGGGCAGATCAAAGAACTCAACGAGAAGATCACCCGGCTGACGTACGAGATCGAGGATGAGAAGCGCAGGAGAAAGGCCGTGGAGGACAGGTTTGACCAGCAGAAGAGCGACTACGACCAGCTGCAGAAAGCACGGCAGAACGAGAAGGAGAGCCTCGGCTGGCAGAAGATGGAGTCTGAGAAGGCCATCAAGGAGAAGGAGTTCGAGATAGAGAGGTTGAGAGTGCTGCTGCAAGAGGAGGGTGCCCGGAAGAGAGAATATGAAAATGAGCTGGCAAAGGTAAGAAACCACTATAATGAGGAGATGAGTAATTTAAGGAACAAGTATGAAACAGAGATTAACATCACCAAGACTACCATCAAAGAGATATCCATGCAGAAAGAGGATGATTCCAAAAACCTCCGCAACCAGCTCGATAGACTCTCGAGGGAGAACCGAGATCTGAAGGAGGAGATTGTCCGTCTCAACGACAGCATCCTGCAGACCACGGAGCAGCGGAGGCGGGCCGAGGAGGACGCCCTGCAGCAGAAGGCCTGTGGCTCCGAGGTGCTGCAGAAGAAGCAGTACCTGGAGATAGAGCTGAAGCAGGTCATCCAGCAGCGCTCCGAGGACAACGCCAGGCACAAGCAGTCCCTGGAGGAGGCGGCCAAGACCATCCAGGACAAAAACAAGGAGATCGAAAGACTCAAAACTGAGTTCCAGGAGGAGGCCAAGCGCCGCTGGGAATATGAAAATGAACTGGCTAAGGTCAGGGCCAATTATGACGAGGAAATCATCAGCTTAAAGAACCAGTTCGAGACGGAGATCAACATCACCAAGACGACCATCCACCAGCTCACCCTGCAAAAGGAAGAGGACACCAGCGGCTACCGGGCCCAGATAGACACCCTCACCAGGGAAAACCGGAGCCTCTCGGAAGAAGTCAAGAGGCTGAAGAACACTCTGGCCCAGAACACGGAGACCCTCAGGAGGGTCGAAGAGAACGTCCAGCAGCAGAAGGCCACCGGCTTGGAGATGTCGCAGCGGAAACAGCAGCTGGAGGTTGAGCTGAGGCAGGTGACGCAGATGCGGACGGAAGAGAGCGCCAGGTACAAGCAGTCTCTGGACGATGCCGCCAAGACGATCCAGGACAAAAACAAGGAGATCGACAGGTTGAAGCAGCTGATCGAGACAGAAGCCAGCCAGAGGAAGTGCCTGGAGGATGAAAACGCCAGGCTGCAGAGGGCGCAGGGCGAGCTGCAGAAAGCTCACAGCAGCGCCACGGAGACCATCAGCAAGCTGAAGGTGCAAGAACAGGAGCTGCTGCGCCTGAGGCTGGACTATGAGCGGGTGTCCCAGGAGAGGACTGTCCGGGACCAGGACATCGCCCGCTTCCAGACCTCCCTGAAGGAGCTGCAGCTGCAGAAACAGAAGGCAGAGGAGGAGTTGGCCAGGCTGAAGAGGGCAGCCTCCGAGGACTCCTCTAAGAGGAAGAAGCTGGAGGAGGAGCTGGAGGGCATGCGGAGGACCCTGAAGGAGCAGGCGATCAAGGTCACCAGCCTGACCCAGCAGCTGGAGCAGGCGTCCATCGTGAAGAAGCGGAGCGAGGACGAGCTGCGGCAGCAGCGGGACACGCTGGACGGCCACCTGCGGGAGAAACAGAGGACCCAGGACGAGCTGCGGAGGCTGGCCTCTGAGGTTGAGGCCCTGCGGCGTCAGCTGCTGCAGGAGCAGGAGAGCGTCAGGCAGGCGCAGACGCGCAACGAGCACTTCCAGAAGGCCATCGAGGACAAGAGCCGCAGCCTGAACGAGAGCAAGATCGAGATCGAGCGGCTGCAGTCACTGACCGAGAGCCTCACCAAGGAGCACCTGATGCTGGAGGAGGAGCTCCGCCAGCTCCGGCTGGAGTACGACGACCTCCAGCGGGGCCGCAGCGAGGCCGACCACGACAAGAATGCCACCATCGCGGAGCTCCGGAACCAGCTGCAGATCAGCAACAACCGCACGCTGGAGCTGCAGGGCCTGATTAACGATTTACAGAGAGAGAGGGAAAACTTGAGACAGGAAATTGAGAGATTCCAAAAGCAGGCCTTAGAG
Seq A exon
GTATTCACAAATATTTGATCGCCGCTTGTTGCCGCTTCACTAATCCCCTCCGCGGACCTCTCCGCCGGGCTGGAGGCTTGCAGCCCTCTCACGTTTTCTCTTTGCTGTTGTCTGTCCTCATCAGACCCGCGGTGGAGTGATTGTGGTGCGGTTGGCCCCTCTCTTCTCTCACCGGCGTTCTCTGTGTAACCCACGCTGGCTCCACCTTTAGAACCTTCCACCGGGTGTAAGACCTGATATCTCTTCCTCTTGATGTTCCACTCTGTTTTCTAGAAGACGGCGGCTCTTACTTTGTGAGCTGCGACCTGCGTTTGTAGTTAAAATCTTCCTAAATAAAAGCCACGTTAAAGGGCTTTTTCAGCCATGTTAAATTGCACGCTTTCTGCACAGTTTTTAAATCACTCTTTCTTGCTTGCTTTTCATGATTTTTTCTGCATGCATTAGTCTATGCTCTTTTCATCCTAGCCCTAATATGTTTCTTTTTGTTTGGCTTTTCTTTTAACCCCTAATTTTAACACTTCTTTAACTTCTAACATGTTTGACTTCTGTAAACAATATTTGTGTGGGGCTGGGGGTGGGGGTGTGGATGAGTCCATAGATTTGTATAGCTTTATTAAACACGTCAATATAGCTGTAACAGGTGGCATGTAGGTACAGCCGGTGTGATAACCTGGAAAAAAATTTGCATATTTGTTCAAACCATAATTACTATTAAGAGTAAAGCAGGTATACAACTGCTCGTATCTCCTATGGAAAAGTATAGTAAGTATAGAAGCCATTTATCAAAGTGGCAATGTATATGTACAGATTTTCTTTTTCCCACGAACTTGTAAGATAAAATAACAGTACAACTAAGGAAAGAGGGAAAGGGCAAATAAGTAACTATATGTTGTACAAATAACAGGAAAAGAGGTCCTATGATATGATGACACCATTATTTTTTTTTTCCATTTCTTTCTTTTTGCATTTTAG
Seq C2 exon
GCATCTAATAGGATTCAGGAATCCAAGAATCAGTGCACTCAGGTCGTGCAGGAGAGGGAGAGCCTCCTGGTGAAAATCAAAGTCCTGGAACAAGACAAGGCCAGGCTGCAGAGGCTGGAGGAGGAGCTGAGTCGCGCCAAGACGACTCTGGAAGCGGAAAGCAGGCTGAAGCAGCGCCTGGAGTGTGAGAAACAGCAGATCCAGAATGACCTGAACCAGTGGAAGACGCAGTACTCCCGCAAGGAGGAGGCCATCAGGAAGATCGAGTCAGAGCGAGAGAAGAGCGAGAGAGAGAAGAACAGCCTTCGGAGCGAGATTGAAAGGCTGCAGGCGGAGATCAAGCGGATCGAGGAGAGGTGCCGGCGGAAGCTGGAGGACTCCAGCCGGGAGACGCAGTCCCAGCTGGAGACGGAGCGCTGCCGGCTGCAGAGGGAGATCGACAGGCTCAAGCAGCGCCCCTATGGGTCCCACCGTGAGACCCAGACCGAGTACGAGTGGTCCGTGGATTCCTCCAAGCTGGTGTTCGACGGGCTGAGGAAGAAGGTGACAGCCATGCAGCTGTACGAGTGCCAGCTGATCGACAAGGCGACCCTGGACAAGCTGCTGAAGGGGAAGAAGTCCGTGGAGGAAGTTGCTTCTGAGATCCAACCTTTCCTCCGGGGAGCGGGAGCCATCGCTGGGGCGTCCGCTTCCCCGAAGGAAAAGTACTCCTTGGTGGAGGCCAAGAGAAAGAAGTTGATCACCCCAGAATCCACAGTCATGCTCCTGGAAGCCCAGGCAGCCACAGGTGGTATAATCGACCCCCACAGGAACGAGAAGCTGACGGTGGACAGTGCCATCGCGCGGGACCTCATCGACTTCGATGACCGCCAGCAGATATATACGGCGGAGAAAGCCATCACTGGCTTCGATGACCCATTTTCCGGCAAGACCGTGTCTGTGTCAGAGGCCATCAAGAAAAATCTGATTGATCGAGAGACCGGAATGCGTCTGCTGGAAGCCCAGATTGCTTCGGGGGGCGTGGTGGACCCCGTGAACAGCGTCTTTTTGCCGAAAGATGTGGCCTTGGCCCGCGGGCTGATTGACAGAGATCTGTATCGTTCCCTGAACGACCCCCGGGATAGTCAGAAGAACTTCGTGGATCCAGTCACCAAAAAGAAGGTCAGTTACATGCAGCTGAGGGAGAGGTGCAGAATTGAACCGCACACTGGGCTGCTCCTGCTGTCAGTACAGAAAAGAAGTATGTCCTTCCAAGGAATCAGACAGCCCGTGACCGTCTCTGAGCTGGTCGACTCTGGTATATTGAGACCGTCCACTGTCAATGAACTGGAGTCGGGTCAGATTTCTTATGACGAGGTTGGTGAGAGAATTAAGGACTTCCTCCAGGGTTCAAGCTGCATCGCAGGCATCTACAACGAGACCACGAAACAGAAGCTTGGCATCTACGAGGCCATGAAAATTGGCTTGGTCCGCCCCGGCACCGCCCTGGAGCTGCTGGAAGCACAGGCAGCAACTGGCTTCATCGTGGATCCCGTGAGCAACTTGAGGTTACCAGTGGAAGAAGCCTACAAACGGGGCCTGGTGGGCATCGAGTTCAAGGAGAAGCTCCTGTCTGCGGAACGAGCCGTCACCGGGTACAATGACCCTGAGACAGGAAACATCATCTCCTTGTTCCAAGCCATGAACAAAGAGCTCATTGAAAAGGGCCATGGCATCCGCCTGCTGGAAGCGCAGATTGCAACCGGCGGGATCATCGACCCGAAGGAGAGCCATCGCCTGCCTGTCGACATCGCCTACAAGAGGGGCTACTTCAATGAGGAGCTCAGTGAGATTCTCTCAGATCCGAGTGATGATACCAAAGGCTTCTTTGACCCGAACACTGAAGAAAACCTTACATATCTGCAGCTGAAAGAAAGGTGCATCAAAGACGAAGAAACTGGCCTGTGTCTCCTTCCCCTGAAAGAGAAGAAGAAACAGGTGCAGACGTCCCAGAAGAACACCCTCAGGAAGCGCAGAGTGGTCATCGTGGACCCGGAAACCAACAAGGAGATGTCCGTGCAGGAGGCCTACAAGAAGGGCCTCATAGACTACGACACCTTCAAAGAACTGTGTGAGCAGGAGTGCGAGTGGGAGGAAATAACCATCACTGGCTCGGACGGCTCCACTCGGGTGGTCCTGGTGGACAGGAAGACGGGCAGTCAGTACGACATCCAAGACACTATCGACAAGGGCCTCATCGACAGGAAGTTCTTCGAGCAGTACCGGTCCGGCAGCCTCAGCCTCACTCAGTTCGCAGATATGATCTCCTTGAAGAACGGCGTGGGTGGTGGCGTGGGCGGCATCGTGGGCGGTGGCAGCAGCACCGGGGGTGGCCTCAGCGATGATGTCTTTGGCAGCTCCCGACACGAGACCGTCAGTAAGATCTCCACCATCTCCAGCATCAAGAATTTAACCATCAGGAGCAGCTCCCTATCTGAGCCCCTGGAAGAGTCCAGCCCCATCGCAGCCATCTTTGACACGGAAAACCTGGAGAAGATCTCCATTTCGGAAGGGATAGAGCGGGGCATCGTTGACAGCATCAGCGGGCAGCGGCTTTTGGAGGCTCAGGCCTGCACGGGCGGCATCATCCACCCGACCACGGGCCAGAAGCTGTCTCTCCAGGATGCAGTCTCCCAGGGCCTGATTGACCAGGATATGGCCACCAGGCTGAAGCCCGCTCAGAAAGCCTTCATTGGCTTTGAAGGAGTGAAGGGCAAGAAGAAGATGTCGGCGGCAGAGGCGGTGAAGGAAAAGTGGCTTCCCTATGAGGCCGGCCAGCGCTTCCTGGAGTTCCAGTACCTCACGGGGGGCCTGGTGGACCCCGAAGTACAAGGGAGGATAAGCACGGAGGAAGCCATCAGGAAGGGGTACATCGACGGCCGGGCAGCTCAGAGGCTGCAAGACACCAGCACCTACGGCAAGATCCTGACCTGCCCCAAAACCAAGCTGAAAATTTCCTACAAGGATGCCATCAACCGCTCCATGGTGGAAGACGTCACCGGCCTGCGCCTGCTGGAGGCTGCCTCTGTGTCCTCCAAGGGCTTGCCTAGCCCCTACAACATGTCCTCTGCCCCGGGCTCCCGCTCCGGCTCCCGCTCCGGCTCCCGCTCTGGGTCCCGCTCCGGCTCGCGCAGTGGGTCCCGGAGAGGAAGCTTCGATGCCACAGGGAACTCCTCCTACTCTTACTGCTACTCCTTTAGCAGCAGCTCGATCGGGCACTAGTGGTCAGCAGGAAAGGTGGCTAGACCTCGGCGCTCGTTTATATGGATTTTCACTGTATTCAGTAATAGTAAAAGCAAACCTCGTGCTTGCGGGAGAGTGATAGAAGTTTTTAGGCTTAAGAAAACATAGCCAAGGGGAGGGGGGTGGGAATACACAGCAGAGGCTGTTCTGGCTTTCTATCTTCTTAGCTCATCTGAACTAATGTAATACACTGGATCTAGTATCTATGAAGTAGCGGTAGTTGGTTATAAGGATAGCACAGATTGAATCTAGAGTTTGTTTCCTCTCTTCTGTGTTTAGATTTTTGATCACTGCTTCTTGAACTTCTTCTGGCCAATAATCCAGATTTCTATGCTTGGTGAAGAAAATAAAATTGACCTTATAGTCATCAGTCTGCTTCTCATCTAAATATTTCTATTTTATGTATTAGGAGGAAATTACCCTACCCCCCCCCCACCCCCCCCAAAAAAAAGAACCCCTCTGAAACTCAAATGTTTGGAATAAGTCTCCTTGGATTGCATGACCCATGACCCCATATACTCTTCAGTGTACCTGTTTGGTCTGGTATTAGTTTGACTGTACATGCATGATAGTAACAATCTTTGCTTTTCTTCTATCAAAGTTTCCTGTTTATTTTGCTTGTCGTTGTCTACGTACTTTCAAAAGGTGTCTTTATGAAGTTTGCTATTCCAGCAATAAAGTTTTAAATGTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015106:ENSBTAT00000020103:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.430 A=NA C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0076914=ERM=WD(100=13.5),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=2.8),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=4.0),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=4.0),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=4.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCAGGGCCTGATTAAC
R:
ATCTTCCTGATGGCCTCCTCC
Band lengths:
350-1322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]