RnoINT0051466 @ rn6
Intron Retention
Gene
ENSRNOG00000013928 | Dsp
Description
desmoplakin [Source:RGD Symbol;Acc:1305794]
Coordinates
chr17:27286796-27294051:-
Coord C1 exon
chr17:27291757-27294051
Coord A exon
chr17:27290692-27291756
Coord C2 exon
chr17:27286796-27290691
Length
1065 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTC
5' ss Score
6.35
3' ss Seq
TTTCTTTTTTTGAATTCTAGGCA
3' ss Score
9.73
Exon sequences
Seq C1 exon
CTGAAAAACACCAAGATTGAAGTTTTGGAAGAGGAGCTAAGACTGGCCCGGGATGCCAACTCGGAAAATTGCAATAAGAATAAGTTCCTAGATCAGAACCTGCAGAAATACCAGGCCGAGTGTTCCCAGTTCAAAGCAAAGCTTGTGAGCCTGGAGGAGCTGAAGAGACAAGCTGAGCTGGATGGGAAGTCAGCCAAGCAAAACCTAGACAAGTGCTACGGTCAGATCAAAGAGCTCAATGAAAAGATCACCCGGCTGACCTATGAGATCGAAGACGAGAAGCGCAGGAGAAAGACCGTGGAGGACAGGTTCGACCAACAGAAGAATGACTATGATCAGCTGCAGAAGGCAAGGCAGTGTGAAAAGGAGAGCCTTGGCTGGCAGAAGCTGGAGTCTGAGAAAGCCATCAAGGAGAAGGAGTACGAGATAGAGAGGTTGAGGGTTCTGCTGCAGGAAGAGGGCGCCCGGAAGAGAGAATATGAAAATGAGCTGGCAAAGGTAAGAAACCACTATAATGAGGAGATGAGTAATTTAAGGAACAAGTATGAAACAGAGATTAACATCACCAAGACCACCATCAAGGAGATATCCATGCAGAAGGAAGATGATTCCAAGAATCTCAGAAACCAGCTTGACAGACTGTCCCGGGAGAACAGAGATCTTAAAGACGAGATAGTCAGGCTCAATGACAGCATCTTGCAGGCCACAGAGCAGCGAAGGCGAGCTGAGGAAAACGCCCTTCAGCAGAAAGCCTGTGGCTCAGAAATCATGCAGAAGAAGCAACACCTGGAGGTTGAACTGAAGCAGGTCATCCAGCAGCGCTCAGAGGACAATGCCAGGCACAAGCAGTCCCTGGAGGAGGCTGCCAAGACAATTCAGGACAAAAATAAAGAGATCGAAAGACTCAAAGCTGAGTATCAGGAGGAGGCCAAGCGTCGCTGGGAATACGAAAATGAACTGAGTAAGGTAAGGAACAGTTACGATGAGGAGATCATTAGCTTAAGAAACAAGTTCGAGACTGAGATCAACATCACCAAGACCACCATCCACCAGCTGACCATGCAAAAGGAAGAGGATACCAGCGGCTACCGAGCTCAGATAGACAACCTCACCCGGGAGAACAGGAGCCTGTCTGAGGAGGTAAAGAGGCTAAAGAACACTCTAGCCCAGACCACCGAGAACCTCAGGAGGGTTGAAGAGAATGTCCAGCAGCAAAAGGCCAGTGGCTCAGAGATGTCTCAGAGGAAACAGCAGTTGGAGATCGAGCTCCGACAGGTCAGTCAGATGCGGACCGAAGAGAGCATGAGGTACAAGCAGTCCCTCGATGATGCTGCCAAGACGATCCAAGATAAAAACAAGGAGATTGAAAGGCTCAAACAGCTGGTAGACAAAGAGACCAATGAGAGGAAATGCCTGGAGGACGAAAATTCCAAGTTGCAGAGAGTGCAGTATGACCTGCAGAAAGCCAACAACAGCGCCACGGAGGCCATGAGCAAGCTGAAGGTTCAGGAACAGGAACTGACACGCCTGCGGATTGACTATGAGAGGGTTTCCCAGGAGAGGACCGTGAAGGATCAGGACATCACGAGGATCCAAAGCTCCCTGAAGGATCTGCAGCTGCAGAAGCAGAAAGCAGAAGAGGAGCTGAGTAGGCTGAAGAGAACGGCCTCCGACGAGTCCTCCAAGAGGAAGATGCTGGAGGAGGAGCTGGAGGCCATGAGGAGGTCTTTGAAAGAGCAAGCGGTCAAGATCACCAACCTGACCCAGCAGCTGGAGCAGGCATCCATTGTTAAGAAGAGGAGCGAGGATGATCTCAGGCAGCAGAGGGATGTGCTGGATGGCCATGTGAGGGAGAAGCAGAGGACCCAGGAGGAGCTGAGGAGGCTCTCCTTGGATGTAGAGGCCCTTCGGCGGCAGCTCGTGCAGGAACAGGAAAATGTCAAGCAGGCTCACTTGAGGAATGAGCATTTCCAGAAGGCCATAGAAGACAAAAGCAGGAGCCTCAATGAAAGTAAAATAGAGATTGAAAGGCTACAGTCTCTCACGGAGAACCTGACCAAGGAGCATTTGATGCTGGAGGAGGAGCTGCGGAACCTGAGGCTGGAATACGACGACCTACGGAGGGGCCGAAGCGAAGCAGATAACGATAAAAACTCAACCATTTCGGAGCTAAGGAGCCAGCTGCAGATCAGCAACAATCGAACCCTGGAACTGCAGGGGCTGATTAATGATTTACAGAGAGAGAGGGAAAATTTGAGACAGGAAATTGAGAAATTCCAAAAGCAGGCTTTAGAG
Seq A exon
GTATTCACAAATATTTGATCAAAGCTTCACTGTGTCTCCCCGTAACTGACTCCAGATCTAATCTGAACTGTTGTCTCGCTGCTTCCAGAATGCCTAATTTCTCCTGTTTACTGCTCATGCCCTTATTACTTGTCAGATCTCTGCTATGGCTTTAAAATCATCCCAATGCCATCCTCTCTTTGTCACTGCATTGAATACCACGCTGTCGAAACCCCATGCTTGGCCCTACTTTAAAAACTTTAGCATGAGAAAAACATCTAAGATACTTCCCACAAATGTTCTGCTCTTGGCTGGGCTTCCAGTGAGTGCTAGCTAGATCATGTGCTTAGCTTGCCCAAGGTCCTGGGTTCAGTCCCCAACACCACCATTTCAACGTACTAAAACACAAGGTATCCAGTATCCAGTGGTCCCACTACACATCATCTTTAATTCAATTTTTTTCTCAAAAAGTAATAATTTTTTGATTATTTCTTACATGATTTTAAATTTCCACCTCTACTTAGATGTCTTTTCTGCATGCATTACCCTGTTGACTTTTGATTGTGCACCTAACGTTTCTTTCTGTTTGACTCCTTCTAACAAGCCCTAATTTAAAAACGACTTCTAATGTGTTTGACTTCTTTAGACAATATTTGTGTGGGGCTGGGTGGTGTGTGTGTATCTGTATATTTGTATTGCTTTGTTAAATGTGTCAGTAGAGTATGCAGGTGAGATGCAAGTGCAGCAGGGATGGTAACTTGGAAGAAAATTGCTCTCCCTTTTTCAAACTATCATTACTGGTAAAAGTAAGGCAGGTTTACAACTTCTAATTCTGTCTGTGGAAAAGGAACACGAAACAGTAAGTATGACGCCATTTACCAAACTGACAATCTATATTTTCATAATTCTTCCAGTAATGTGTCAGGTAGCAAATGAACAGTATATGTAGGGAAAATACAGACAGGGGAAAATGAGACTATGTTTAAAATATATATGTAGGAAAGGGGGTTAAATTACATTGATCATATGCTAGCATCTAAACAGTATTTTTTTCCCCATTTCTTTCTTTCTTTTTTTGAATTCTAG
Seq C2 exon
GCATCTAATAGGATTCAGGAGTCAAAGAGTCAGTGCACTCAAGTCGTTCAGGAGAGAGAGAGCCTGCTGGTGAAGATTAAGGTCCTGGAGCAAGACAAGGCAAGGCTGCAGCGGCTGGAGGACGAGCTGAACCGTGCCAAAGCAACGCTGGAGGCAGAAACCCGGGTGAAACAGCGCCTAGAGTGTGAGAAGCAGCAGATCCAGAACGACCTGAACCAGTGGAAAACTCAATACTCCCGCAAGGAGGAGACCATTAGGAAGATAGAGTCGGAAAGAGAGAAGAGTGAGAGAGAGAAGAACAGTCTTAGGAGTGAGATTGAGAGACTCCAGGCAGAGATCAAGAGGATTGAAGAGAGGTGCAGGCGGAAGCTAGAGGATTCTACCAGGGAGACTCAGTCCCAGCTGGAAACGGAACGCTGCAGGCTTCAGAAGGAGATTGACAAACTCAGGCAGCGCCCCTATGGGTCCCATCGGGAGACCCAGACAGAGTACGAGTGGACCGTTGATTCCTCCAAGCTGGTATTTGACGGACTGAGGAAGAAGGTGACAGCAATGCAGCTCTATGAGTGCCAGTTGATTGACAAGACAACACTGGACAAGCTATTGAAGGGGAAGAAGTCAGTGGAGGAGGTGGCTTCAGAGATCCAGCCTTTCCTGCGGGGTGCGGGGGCCATCGCTGGTGCTTCTGCTTCTCCCAAGGAAAAATACTCTTTGGTGGAGGCCAAGAGAAAGAAATTCATCACCCCAGAATCCACAGTCATGCTTCTGGAGGCCCAGGCGGCCACTGGTGGTATCATCGATCCCCATCGGAATGAGAAGCTCACGGTGGACAATGCCATAGCTCGGGACCTCATTGACTTTGATGACCGCCAACAGATCTACACAGCCGAGAAAGCCATCACTGGTTTTGATGACCCGTTTTCAGGCAAGACCGTATCTGTTTCAGAAGCCATCAAGAAGAATTTGATTGACAGAGAAACCGGAATGCGCCTGCTGGAAGCCCAGCTTGCTTCAGGGGGTGTAGTTGATCCAGTCAACAGTGTCTTTTTGCCAAAAGATGTAGCCTTGGCCCGTGGGCTGATTGATAGGGATTTGTATCGCTCCTTGAATGACCCCCGAGATAGCCAGAAGAACTTCGTGGATCCAATCACCAAGAAGAAGGTCAGCTACATGCAGCTGAGAGAACGGTGCAGAATCGAACCCCACACGGGTCTGCTCCTGCTGTCAGTACAGAAGAGAAGCATGTCCTTCCAAGGAATCAGACAGCCAGTGACCGTCACCGAACTGGTTGATTCTGGCATATTGAGACCATCCACCGTAAATGAACTGGAATCTGGTCAGATTTCTTATGACGAGGTTGGCGAGAGAATTAAGGACTTCCTCCAGGGGTCAAGCTGCATAGCAGGTATTTATAATGAGACCACGAAACAGAAGCTTGGCATCTACGAGGCTATGAAAATTGGCTTAGTTCGACCTGGTACCGCTCTGGAGTTGCTGGAAGCCCAAGCAGCTACTGGTTTTATAGTAGATCCTGTCAGCAATTTAAGGTTACCTGTGGAGGAAGCCTACAAAAGAGGTCTGGTGGGCATTGAGTTCAAAGAGAAGCTTCTCTCTGCAGAACGAGCTGTCACTGGCTATAACGATCCTGAAACCGGAAACATCATCTCTTTGTTCCAAGCGATGAACAAGGAACTCATCGAAAAGGGCCACGGAATTCGCTTACTGGAGGCTCAGATCGCAACCGGCGGTATCATTGATCCAAAGGAGAGTCATCGGTTACCGGTTGACATGGCTTATAAGAGGGGCTATTTTAACGAGGAGCTTAGCGAAATCCTCTCAGACCCAAGTGATGATACCAAAGGCTTTTTCGATCCCAACACTGAAGAAAACCTCACCTATTTGCAACTGAAAGAAAGGTGCATCAAAGATGAGGAGACGGGGCTCTGCCTGCTGCCTCTGAAAGAAAAGAAGAAACAGGTGCAGACTTCACAGAAGAACACCCTCAGAAAGCGGCGGGTGGTAATAGTTGACCCAGAAACCAACAAAGAGATGTCTGTTCAGGAGGCGTACAAGAAAGGCCTTATTGATTATGAAACCTTCAAAGAGCTGTGTGAGCAGGAGTGTGAATGGGAAGAAATAACCATCACGGGTTCGGATGGCTCCACCAGGGTAGTCCTAGTAGACAGGAAGACGGGCAGTCAGTATGACATTCAAGATGCTATTGACAAAGGCCTCGTCGACAGGAAGTTCTTCGATCAATACCGATCCGGCAGCCTCAGCCTCACGCAGTTTGCGGACATGATCTCCTTGAAGAATGGCGTTGGCACCAGCAGCGGCTTGAGCGGGAGTGTCAACGATGATGTGTTTAGCAGCTCTCGACACGAATCCGTGAGTAAGATTTCCACCATATCCAGCGTCAGAAATTTAACCATCCGAAGCAGCTCTCTGTCTGACCCCCTGGAGGAGTCAAGCCCCATTGCGGCCATCTTTGACACAGAAAACCTGGAGAAAATCTCCATTACAGAAGGTATAGAGCGGGGCATTGTGGATAGCATCACTGGTCAGAGGCTTCTGGAAGCTCAGGCCTGCACGGGTGGCATCATCCACCCTACCACCGGTCAGAAGCTGTCCCTTCAAGACGCAGTCTCCCAGGGTCTCATTGACCAAGACATGGCCACCAGGCTGAAGCCCGCCCAGAAGGCCTTCATTGGCTTTGAAGGTGTCAAAGGAAAGAAGAAGATGTCAGCAGCAGAGGCAGTGAAAGAAAAATGGCTGCCCTACGAGGCAGGCCAGCGCTTCCTGGAGTTCCAGTTCCTCACCGGAGGCCTTGTTGACCCGGAAGTACATGGGAGGATCAGCACCGAAGAAGCCATCCGCAAAGGTTTCATCGATGGCCGTGCAGCTCAGAGGTTGCAGGACATCAGCAGCTATGCCAAAATCCTCACCTGCCCCAAAACCAAATTAAAAATCTCCTACAAGGATGCCATGAATCGCTCCATGGTGGAAGACATCACTGGGCTGCGCCTTCTGGAAGCCGCCTCCGTGTCCTCGAAGGGTTTGCCTAGCCCTTATAACATGTCGGCCCCAGGCTCCCGCTCTGGCTCGAGGTCCGGATCTCGCTCAGGCTCCCGCTCTGGTTCCCGTAGTGGGTCTCGAAGAGGAAGCTTCGATGCGACCGGGAATTCCTCCTACTCCTATTCCTATTCATTTAGCAGTAGCTCCATTGGGTACTAGTTGGTCAGAAGTAGTTGCCATGCCTTAGAATCATTTGTATGAATTTCTACTTTATCTTAAAAAAAACAAAGAAAACCTGGTGCTTGAGGTATAGCCGTAGAACCCTCTGTGCTTAAAACATAGCTGCAAGAGAATTCCGATAGTAAAGGTTCGCTTAGCTCTGTAGTTTTCAGCTCAACCAATGGACTTCCATATAGTGAATGAGAAGTGGTGAGGATAGCACACGTTGAATTGGGAATTTACTTCCTCCATATTTTGATCAATTCTCTGTAACTTTTCTTGGCCTATAAGGTCCAATTTCTGTGTCTGGAGATATAAGAGATTACACTGACTACTGGTGTCTTGGTCCTTATGTTGCCTCTCACTTAAATAGTTCCACTTTCTGCCTTAGGAGCAAACTGGCCCCTCCCCACTCCAAGTAGTTTGGCCCAAGTTTCCTTTAGTTTGCGGACATAGATTGAATCACCCATATATTCTTGAATACACTTGTTTGGTTTGGTATTACTCTGACTAGGTTCATAATAGCGCAGTCTTTGCCTTTTGTTAGCCAAGGTTTTCTGTTTATTTGGCTTGTCATTTTCCATGTGCTTTAAAAAGGTGTCTTTATGAAGTTTGCTGTTCTGACAATAAACTTTTAGACTTTGGAAGTTTCTGTGTTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013928:ENSRNOT00000018649:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.482 A=NA C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.0),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGAGCCAGCTGCAGATCA
R:
ACTGGTTCAGGTCGTTCTGGA
Band lengths:
345-1410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]