MmuINT0053539 @ mm9
Intron Retention
Gene
ENSMUSG00000054889 | Dsp
Description
desmoplakin [Source:MGI Symbol;Acc:MGI:109611]
Coordinates
chr13:38283230-38290446:+
Coord C1 exon
chr13:38283230-38285524
Coord A exon
chr13:38285525-38286564
Coord C2 exon
chr13:38286565-38290446
Length
1040 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTC
5' ss Score
6.35
3' ss Seq
CTTTCTTTTTTGAATTCTAGGCA
3' ss Score
10.11
Exon sequences
Seq C1 exon
CTGAAAAACACCAAGATTGAAGTTTTGGAAGAGGAGCTAAGACTGGCCCGGGATGCCAACTCGGAAAATTGCAATAAGAATAAGTTCCTAGATCAGAACCTGCAGAAATACCAGGCAGAGTGTTCCCAGTTCAAGGCCAAGCTTGTGAGCCTGGAGGAGCTCAAGAGACAAGCTGAGCTCGATGGAAAGTCAGCCAAGCAAAACCTAGACAAGTGCTACGGTCAGATCAAGGAACTCAACGAGAAGATCACCCGGCTGACCTATGAGATCGAAGACGAGAAGCGCCGGAGAAAGACCGTGGAGGACAGGTTCGACCAACAGAAGAATGACTATGATCAGCTGCAGAAGGCAAGGCAGTGTGAGAAGGAGAACCTCAGCTGGCAGAAGCTGGAGTCTGAGAAAGCCATCAAGGAGAAGGAGTACGAGATAGAGAGGTTGAGGGTTCTGCTGCAGGAAGAGGGCGCCCGGAAGAGAGAGTATGAAAATGAGCTGGCAAAGGTAAGAAACCACTATAATGAGGAGATGAGTAATTTAAGGAACAAGTATGAAACAGAGATTAACATCACCAAGACCACCATCAAGGAGATATCCATGCAGAAGGAAGACGATTCCAAGAATCTCAGAAACCAGATGGACAGACTCTCCCGGGAGAACCGAGATCTTAAGGATGAGATAGTCAGGCTCAATGACAGCATCTTGCAGGCCACGGAGCAGCGAAGGAGAGCCGAGGAGAACGCCCTGCAGCAGAAAGCCTGTGGCTCGGAAACCATGCAGAAGAAGCAGCGCCTGGAGATTGAACTGAAGCAGGTCATCCAGCAGCGCTCAGAGGACAACGCCAGGCACAAGCAGTCCCTGGAGGAGGCTGCCAAGACCATCCAGGACAAGAACAAAGAGATCGAAAGGCTCAAAGCTGAGTATCAGGAGGAGGCCAAGCGGCGCTGGGAATACGAAAATGAACTGAGTAAGGTAAGGAACAGTTACGATGAGGAGATCATTAGCTTAAAAAACCAGTTCGAGACCGAGATCAACATCACCAAGACCACGATCCACCAGCTGACCATGCAGAAGGAAGAGGACACCAGTGGCTACCGAGCGCAGATAGACAATCTCACCCGAGAAAACAGGAGCTTGTGTGAGGAGGTCAAGAGGCTGAAGAACACTCTAGCCCAGACCACCGAGAACCTCAGGAGGGTCGAAGAGAACGCCCAGCAGCAGAAGGCCACTGGCTCAGAGATGTCTCAGAGGAAACAGCAGTTGGAGATCGAGCTCCGACAGGTCACTCAGATGCGAACTGAAGAGAGCATGAGGTACAAGCAGTCCCTCGATGACGCTGCCAAGACCATCCAGGATAAGAACAAGGAGATCGAAAGGCTCAAACAGCTGGTCGACAAAGAAACCAATGAGAGGAAGTGCCTGGAGGACGAAAATTCCAAGTTGCAGAGAGTCCAGTATGACCTGCAGAAAGCCAACAACAGCGCCACGGAGGCCATGAGCAAACTGAAGGTTCAGGAACAGGAGTTAACGCGCCTACGGATTGACTATGAGAGGGTGTCCCAGGAGAGGACCGTGAAGGATCAGGACATCACGAGGATCCAGAGCTCCCTGAAGGATCTGCAGCTGCAGAAGCAGAAAGCGGAAGAGGAGCTGAGTAGGCTGAAGAGAACAGCCTCCGACGAGTCCTCCAAGAGGAAGATGCTGGAGGAGGAACTGGAGGCCATGAGGAGGTCTTTGAAAGAGCAAGCCGTCAAAATCACCAACCTGACCCAGCAGCTGGAGCAGGCGTCCATTGTTAAGAAGAGGAGCGAGGATGACCTCAGGCAGCAGAGGGATGTGCTGGATGGCCACGTGAGGGAGAAGCAGAGGACCCAGGAGGAGCTGAGGAGGCTCTCCTTGGATGTCGAGGCCCTCCGGCGGCAGCTGGTCCAGGAACAGGAGAATGTCAAGCAGGCTCACTTGAGGAATGAGCATTTCCAGAAGGCCATAGAAGACAAAAGCAGGAGCCTCAATGAGAGTAAAATAGAGATCGAAAGGCTACAGTCGCTCACGGAGAACCTGACCAAGGAACACTTGATGCTGGAGGAAGAGCTGAGGAACCTGAGGCTGGAGTACGACGACCTGCGGAGGGGCCGGAGTGAAGCGGACAGCGATAAAAACTCAACCATCTCCGAGCTAAGGAGCCAACTGCAGATCAGCAACAATCGAACCCTCGAGCTGCAGGGGCTGATTAATGATTTACAGAGAGAGAGGGAAAATTTGAGACAGGAAATTGAGAAATTCCAAAAGCAGGCTTTAGAG
Seq A exon
GTATTCACAAATATTTGATCAAAGCTTCACTGTTTCTCCCGTAACTGACCCCAGATCTAATCTCAACTGTTGTCTTGCTGCTTCCAGAATGTCTAATCTCTCTCTTTTTTTACTGCTCATAAACTTACTACTCAGATCTATACTATGCCTTTAAAATCATTCCCATACCATTCACTCTTCACTGCATTGAATGCCATTCTGTTGGAAACCTGTGCTTGACTCTACTTCAAAAACCTTAGCATGAGAAAAACATCTAAGAGACTTCCCACAAATGTTCTGCTCTTGCCTGGGGTTTCCAGTGAGTGCAAGATCACGCACTTAGCTTGCCTAAGGTCCTGGGTTCAGTTCCCAACACCAACATTTTGACGTTGTAAAATACAAGGTGGTTCTTCTTATCTAGTGGTCTGACTGTACGTCATCTTTAATTCATTTTTTTCCTCAGTGAAATTGATTATTTCTTACAAAAATTTTAAATTTCCACCTCACTTAGATGTCTTTTCTGCATGCATTATCCTGTTGTCTTTTGACCATGTGCCTAACGTTTCTTTCTGTTTGGTGTCTTCTAACAAGCCCTAATTTAAAAATGACTTCTAATATATTTGACTTCTATAGACAATATTTGTGTGGGGCTGGGTTGTGTGTGCGTATTTGTATATTTGTATCGCTTTGTTACATGTGTCAGTACAGTATACCAGGTGGAATGTAGGTACAGCAGGGATGTTAACTTGGAAGAAAACTACTTTTTTCAAACTTCATTACTGTTAAGAGTAAGGCAGGTCTACAACTTCTAATTCTGTCTATGGAAAAGGAACACAAAACAGTAAGTATGAAGCCATTTACCAAACTGGCAATCGACATTTTCATAATTTCTTCCAGTAATGTGTCAGGTAGCAAATTAACAGGGAAAATGCAGACAGGGGAAAATGAGACTATGTTTAAAATACATATGTAGGAAAAGGAGGTTAAATTACATTGATCATATGTTAGCATCTAAACAATAATTTTTTTCCCCATTTCTTTCTTTCTTTTTTGAATTCTAG
Seq C2 exon
GCATCTAATAGGATCCAGGAGTCAAAGAGTCAGTGCACTCAAGTTGTTCAGGAGAGAGAGAGCCTGCTGGTGAAGATCAAAGTCCTGGAGCAAGACAAGGCGAGGCTGCAGCGGCTGGAGGATGAGCTGAACCGTGCCAAAGCAACGCTGGAGGCAGAAAGCCGGGTGAAACAGCGTCTGGAGTGTGAGAAGCAGCAGATCCAGAACGACCTGAACCAGTGGAAAACTCAGTATTCCCGCAAGGAGGAGACCATTAGGAAGATAGAGTCGGAAAGAGAGAAGAGCGAGCGAGAAAAGAACAGTCTCAGGAGTGAGATCGAGAGGCTCCAGGCGGAGATCAAGAGGATCGAAGAGAGATGCAGGAGGAAGCTAGAGGATTCTTCTAGGGAGACTCAGTCCCAGCTGGAATCCGAACGCTGCAGGCTTCAGAAGGAGATCGAGAAACTCAGGCAGCGCCCCTACGGGTCCCATCGGGAGACCCAGACGGAATACGAGTGGACCGTTGATTCCTCCAAGCTGGTATTTGATGGGCTGAGGAAGAAGGTGACGGCAATGCAGCTCTATGAGTGCCAGCTGATCGACAAGACGACGCTAGACAAGCTGTTGAAGGGGAAGAAGTCAGTGGAGGAGGTGGCCTCAGAGATCCAGCCTTTCCTGCGCGGCGCAGGCGCCATCGCCGGGGCTTCCGCTTCTCCCAAGGAAAAGTACTCTTTGGTGGAGGCCAAGAGAAAGAAATTCATCACCCCAGAATCCACTGTCATGCTTCTGGAGGCCCAGGCAGCCACCGGTGGTATCATCGATCCCCATCGGAATGAGAAGCTCACTGTGGACAATGCCGTAGCCCGGGATCTCATCGACTTCGACGACCGCCAACAGATCTACACAGCGGAGAAAGCCATCACTGGTTTCGATGACCCGTTTTCGGGCAAGACGGTCTCTGTTTCAGAAGCCATCAAGAAGAATTTGATCGACAGAGAAACCGGAATGCGCCTGCTGGAAGCCCAGCTTGCTTCAGGGGGTGTAGTTGATCCAGTCAACAGTGTCTTCTTGCCAAAAGATGTCGCCTTGGCCCGTGGGCTGATTGATAGAGATTTGTATCGCTCCTTGAACGATCCCCGAGATAGTCAGAAGAACTTCGTGGATCCAATCACCAAGAAGAAGGTCAGCTACATGCAGCTGAGAGAAAGGTGCAGAATCGAACCCCACACGGGTCTGCTCCTGCTGTCAGTACAGAAGAGAAGCATGTCCTTCCAGGGAATCAGACAACCCGTGACCGTCACCGAACTGGTTGATTCTGGCATATTGAGACCGTCCACTGTAAACGAACTGGAATCCGGTCAGATTTCCTATGATGAGGTTGGGGAGAGAATCAAGGACTTCCTCCAGGGTTCAAGCTGCATAGCAGGCATATATAATGAGACCACTAAGCAGAAGCTGGGCATCTATGAGGCCATGAAAATAGGCTTAGTTCGACCTGGTACCGCCCTGGAGTTGCTGGAAGCCCAAGCAGCTACTGGCTTTATTGTGGATCCCGTCAGCAATTTAAGGCTACCTGTGGAGGAAGCCTACAAGAGAGGTCTGGTGGGCATTGAGTTCAAAGAGAAGCTTCTGTCTGCGGAACGAGCCGTCACTGGCTACAACGATCCTGAGACCGGAAACATCATCTCTTTATTCCAAGCAATGAACAAGGAGCTCATCGAAAAGGGCCATGGCATTCGCTTGCTGGAGGCACAGATCGCAACCGGCGGCATCATCGACCCGAAGGAGAGCCATCGGTTACCGGTTGACATGGCGTATAAGAGGGGTTATTTTAATGAGGAGCTTAGCGAAATCCTCTCAGACCCAAGTGATGATACCAAAGGCTTTTTCGATCCAAACACAGAAGAAAACCTCACCTATCTGCAACTGAAGGAGAGATGCATCAAAGATGAGGAAACAGGGCTCTGCCTGCTGCCCCTGAAAGAGAAGAAGAAACAGGTGCAGACTTCTCAGAAGAACACGCTCAGAAAGCGGCGGGTGGTCATAGTTGACCCGGAAACCAATAAGGAGATGTCTGTTCAGGAGGCCTACAAGAAAGGTCTCATTGATTATGACACCTTCAAGGAGCTATGTGAACAAGAGTGCGAATGGGAAGAAATAACCATCACAGGATCAGACGGCTCCACCAGGGTGGTCTTAGTGGACAGGAAGACCGGCAGTCAGTATGACATTCAAGATGCTATTGACAAGGGCCTCGTTGACAGGAAGTTCTTCGATCAATACCGATCAGGCAGCCTTAGCCTCACACAGTTTGCTGACATGATCTCCTTGAAAAACGGCGTCGGCAACAGCAGCGGCTTGGGTGGGAGTGTCAACGATGATGTTTTTAGCAGCTCCCGACACGACTCCGTGAGTAAGATTTCCACCATATCCAGTGTCAGAAATCTAACCATCCGAAGCAGCTCTCTGTCAGACCCTCTGGAGGAGTCAAGCCCCATTGCGGCCATCTTTGACACAGAGAACCTGGAGAAAATCTCGATCGCAGAAGGTATAGAGCGGGGCATTGTGGATAGCATCACCGGTCAGAGGCTTCTGGAGGCTCAGGCCTGCACTGGTGGCATCATTCACCCTACCACTGGTCAGAAGCTCTCCCTTCAAGATGCAGTCAACCAGGGTCTCATTGACCAAGACATGGCCACCAGGCTGAAGCCTGCCCAGAAGGCCTTCATCGGCTTTGAAGGGGTAAAAGGAAAGAAGAAGATGTCGGCAGCAGAGGCAGTCAAAGAGAAATGGCTTCCCTACGAGGCAGGCCAGCGCTTCCTGGAGTTCCAGTTCCTCACGGGAGGCCTTGTTGACCCGGAAGTGCATGGGAGGATCAGCACCGAAGAAGCCATCCGCAAAGGTTTCATCGATGGCCGTGCAGCTCAGAGGTTGCAGGACATCAGCAGCTATGCCAAAATCCTCACCTGCCCCAAAACCAAGTTAAAAATCTCCTACAAGGATGCCATGAATCGCTCCATGGTGGAAGACATCACTGGGTTGCGCCTTCTGGAAGCCGCCTCCGTGTCCTCGAAGGGTTTGCCTAGCCCTTATAACATGTCAGCCCCAGGCTCCCGCTCTGGTTCAAGGTCCGGATCTCGCTCAGGCTCCCGCTCTGGCTCCCGCAGCGGGTCTCGGAGAGGAAGCTTCGATGCTACGGGCAATTCTTCTTACTCCTATTCCTATTCATTTAGCAGTAGCTCCATTGGGGGGTACTAGTGGTCAGAAGTAGTTACCGTACCTTAGGATCATTTGTATGTCTACTTTATCTTAACAAAGAAAACCTGGTGCTTGCAGTATAGCTGTAGAATTTTCTATGTTCAAGACGTAGCTGCAATAAAATCCCAGTAGTAAAGGCTCATTTAGCTCTGTAGCTTTCGGCTCAATTAATGTACTTCCTTATAGTGAATGAGAAGTGGTAGTCATTTGTAAGGATAGCACACATTGAATTTGGAATTTATTTCTTCCATGTTTTGATCAATTCTCTGTAACTTTTCTTGGCTTATAAGGTCCAATTTCTGTGTCTGGAGGTATAAAAAAATTACACTGACTACTGGTGGCTTAGTACTTTATGTTGTCTCTCACCTAAATAGTTCCACTTTCTGCATTAGGAGAAAACTGCTCCCCTCCCCAAGTATTTTAGTCCAAGTTTCCTTTAGTTTGAGAACATAGATTGTATCACCCATATATTCTTGAATACACTTGTTTGGTTTGGTATTACTTTGACTATGTCCACAATAGCAGCAATCTTGGCTTTTTGTTAGCCAAAGTGTTCTGTTTATTTGGCTTGTCATTTTCCGTGTGCTTTAAAAAGGTGTTGTTATGAAGTTTGCTGTTCTGGCAATAAACTTGCAGACCTTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054889-Dsp:NM_023842:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=2.8),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.1),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.0),PF0068115=Plectin=WD(100=4.2),PF0068115=Plectin=WD(100=4.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAACTGCAGATCAGCAA
R:
TCCACTGGTTCAGGTCGTTCT
Band lengths:
344-1384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: