GgaINT0095164 @ galGal3
Intron Retention
Gene
ENSGALG00000012790 | DSP
Description
NA
Coordinates
chr2:65692113-65698497:-
Coord C1 exon
chr2:65696206-65698497
Coord A exon
chr2:65694780-65696205
Coord C2 exon
chr2:65692113-65694779
Length
1426 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTC
5' ss Score
6.35
3' ss Seq
TTTCTTGTTTAAAATTTTAGGCA
3' ss Score
7.85
Exon sequences
Seq C1 exon
ATGAAAGCCACCAAAATTGAACTTCTGGAAGAAGAACTCAGACTTGCCAGGGATTCAAATTCAGAAACAAACAACAAGCATAAATTCCTGGAACAGAATCTGCAGAAGTACCAGATGGACATTTCTCAGCTCAAAGCAAAGCTGATGAGTTTGGAGGAGATGAAAAGACAGGCTGAAATGGATGGAAATTCTGCTAAGCAAAACCTGGACAAATGCTATGCCCAAATAAAGGATCTAAATGACAGAATAACCAGGTTGACTTACGAGACTGAAGATGAGAAAAGGAAAAGGAAGTTGCTGGAGGACAGATATGAGCAACAAAAGAATGACTACGACCAGCTGCAGAAAACAAGACAAAACGAGAAAGACAGCCTTGGCTGGCAGAAGTTAGAATCTGAGAAGGTCATCAAGGAGAAGGAGTACGAGATAGAAAGATTAAGGGTTCTCCTGCAGGATGAAGGCACACGGAAGAGGGAGTATGAAAATGAGCTGGCTAAGGTAAGAAACCAGTTTAGCGAGGAGATGAGTAATTTAAAGAACAAGTATGAAACAGAAATTAATATTAAGAAGACCACAATCCAGCAGATAGCTGCACAGAAAGATGATGATGCAAAAGGTCTCAGAGCCCAGGTTGACAGACTGTCAAGAGAAAACAGAGACCTTAAGGATGAGATTGTGAGGCTGAACGATGCCATTCTGCAAACCACAGATCAGCGGAGGAGGGCAGAAGAAGATGCTCTTCAGCAGAAGGCTTGCAGTTCTGAGGTGTCGCAGCAGAAGCACCAGTTAGAGCTGGAGCTGAAACAGATCATTCAGCTTCGTGGTGAAGACAACTCAAGATACAAGCAGGCTCTTGAAGAGGCTGCTGCTACTATTCAGGATAAAACTAAGGAGCTGGAAAGGCTAAAGCTTCAGCTTCAGGAAGAAGCTAAAAGCCGATGGGAGCTTGAAAATGAGTTGGCTAAGGTAAGGAACAGTTATGATGAGGAAATTATTAGCTTAAAGAACAAATATGAAACAGAGATTAATATCACAAAGACCACAATTCATCAGGTCACTATGCAAAAGGAAGAGGATACCAATAATTATAGAACACAGCTTGATAATGCTGTGAGAGAAAATAGGAATTTGTGTGAGGAAATTAGGAGACTGAAGAATACAATAACTCAAACAACAGATAATCTACGGAAAATAGAAGAGAATGCTCAGCAGCAAAAGGCAGCTGGCTCAGAGCTTTCTCAGAAGAAACAGCAGCTGGAGATTGAACTAAAACAAGTTATTCAGAGGCACTCTGACGAGAGCATGCGATACAAACAATCGCTTGATGATGCTTCTAAGACCATTAAAGAGAGAAACAAAGAGATTGAAAGGCTGAGAAAGTTGTTGGATGTAGAGACAAGTCAAAGAAAAGAACTAGAGGATGAGAACAATCAGTTAAAAAGAGTTCAGTTTGACCTTCAGAAAGCAAACACGAGTGCTACTGAGACAATTAACAAACTGAGGATCCAGGAGCAGGATCTGGCCAGACTGAAAATTGACTATGAAAGAGTTTTGCAAGAGAAAAAAGGCAGGGATCAAGAAAGTGCAAAGTTGCAAAGCACTATAAAAGACTTGCAGATCCAAAAACATAAGCTGGAGGAGGAACTTTGCAGGCAGAATAAGAATGTGATGGAGGAGACAGCCAGGAGGAAGAAACTGGACGAGGAAGTAGAAGGCATGAGGAGATCTCTGAGAGAGCAATCAGTTAAAATAACTAATCTCACACAGCAGATAGAGGAAGTGTCTATTGTAAAGAAGAGAAATGAAGATGACCTTAGACACCAAAGAGAAGTACTAGATGGCCACGTGAGAGAGAAACAAAGGTACATGGAGGAGATAAGAAAATACACCTCTGATCTTGAGACTTTACGTCGTCAGTTGGTACAAGAACAGGAGCAATTAAAACAGGCTCACCTGCGAAATGAGCACTTACAGAAAACCTCTGAGGAGAAGAGCAAAAACTTGAACGAGTGCAAAATTGAAATCGAAAGGCTTCAGTCTCTCACCGAGAACCTAACCAAGGAACACTTGTTACTGGAGGAAGAACTGCGAAATGTTAGATTGGAGTATGATGATCTCAAAATGGTCAGAAGTGAAGTTGATGAGAAAAATTCTGCCATTGCTGAACTAAAGAATCAGCTTCAGACAAGCAGCAAGCAAACCCTGGAACTTCAGGGGTTGATTAATGATTTACAGAAAGAAAGGGAAAAATTGAGACAGGAAATTGAAAAATTCCAAAAGCAGGCTCTGGAG
Seq A exon
GTATTCACACATATTTTGATCCCAGCTTTACTGTCTGTCAGATATATAATTAATCACAATGTCCATTTGAACCAACTTAATTCACACCTTGCTGATTAAGTTCACTGTACTTGCAACTAATATTCCTTTTATGGCCACTCTCTTCATTATTTTTAAAAGAAAAATGGCAGGATTAGGCCACTTTCTTAGCCCCTTTACTCCCTGAGGACTGTGCTAGGAAACTTTAAAGTGTCTTTTTCACCTAGCTGAGCCTTGCCCTCAGCGTGGAGGAAACCCTGGATTTCAGTCTTCACCAAACTATCCTAAGGGAAAATAAGAATACATGGAATACCACCGTGCTTTAGCTGTACTCTGCTGGCTGTGTGCTACCCAGGTCTGTTTTGGTCAGAATGAGTTAAAGCAGTCCTTTGAGGCTGACCTGAGCTGTATCACAAACTAAACAAGATAAAAGCCCCAGAACCAACAAACCATCAAAGTGCTGTTTAGCTGCATAAAGTGGTGACTAAGAATTAAAAGTGATGCTGCCAGCTAAGATACCTAAAACCTAAATTTCATTGACTGTTGGGACTTCTGTTCCTAAGTCACCAAGGGTGACTTAAATTTCTCTATCAGCCCGTGTTCTTTAACCTTGAGATGACAACATAGATAAGCTAAAGAAAACTTATTTTTGCATCTTCATTCTTCTACCTTTTGAAAATGTTTCTTTTTCTGTGTTTGTCCTGCATATTTTTTCCTCATTCTCATCTATTCTGTCAATTATTTAGTTTTTCTTTATTTTTAAAACCTTAATACTAATTTTAATAACATTTAGCATTGCCTGACATCTAAACGTACATAATGCATGTGTTACAAATATATAACATTTTATTTGGTTTAATATGGACTGCATGTGAATGTGCATGTAGGTGTTTGTGTATAAAGGTGTATGTGTGTATATATATTATATTATGAAGATATTAAGGGAATAAAATGTAAATCAACACAGGTAAAATTGTTTGAAACTAATAGGAAAAAGTGAGTCATATATTTCATTTTCATCTATGTGTGGCCAGTTCTTAGCTGATATGTATTCACTCAGATTAGTAGAATTATGCCAGGGTACACCTATTGAGCATCAGACTCTTAAAGAATCTTGAGTGCTCCGTGCATGTACTATGAGATGCATTAAGAAGTCATAAAGAGCTAACTAAATCACTAGAAAATTAAGATTGTAGGTAATAGGATGGAGACTCTGGTACTAAAGACACTTTCATTGAAGGGACACATATACCTTCACTGGTTTATTTTATCTGTGGTCTTGGGTAAGGCACTGCTGTGACTAGAATGTTTTCCAGTGGCAGGTTAAATGACAGGCTGAAGAGTGTTGTAAGTGGAGAGCATAAGTCTAACTATCTTCTCTTGGTTTATTTCTTGTTTAAAATTTTAG
Seq C2 exon
GCATCCAATAGGATTCAAGAATCCAAAAATCAGTATAATCACATTATGCAAGAAAGAGAAACCTTGCTGATAAAAATGAGTGCTCTGGAGCAAGACAAAGCCAGGCTGCAGAGATTAGAAGAGGAGCTGAACCGTTTGAAAGTTAACCTGGAATCAGAGTCTCGTTTGAAGCAACGCCTGGAAAATGAGAAACAACAAATTCTGAATGACCTCAACCAATGGAAGAGCCAGCACTCCCGGACGGAGGAATCCATAAGGAAGATCCAGTGTGAGAGAGAGAAGAGTGAGAGGGAGAAGAACACCTTGAGGAGTGAGATTGAAAGGCTGCAGATGGAGATTAAAAGGATTGAGGAGAGATACCGGTGCAGACTGGAAGAGACTGCTGTCAAAAACCAGTCAGAGTTGGAGTCTGAACGTCTCAGGCTGCAGAGAGAGATTGAGAAACTTAAACAACGCCCATATGGGTCTCACAGATCTACTCAGACTGAAGAAGACTTCTGTATTGATGCCTCCAAGTTGCTGTTCAATGGGCTGCGGAAGAAAATTACAGCAATGCAGCTATATGAATGTCAGCTTATAGACAAACTCACTCTGGATAAATTGCTGAAGGGGCAGAGGTCAGTAGAAGAAGTTGCTGCTGACATTGAACCCTTTCTGAAAGGGGCAGGTGCTATTGCAGGAGTGTCTGTTTTACCCAGACAGAAGTACTCCTTTGTTGAGGCCAAACGGAACCAGCTGCTTACGGCGGAAAATGCAGTCCTGCTCTTGGAAGCCCAGGCAGCAACAGGAGGAGTGATAGATCCACACCGCAATGAGGTGTTAACAGTGGACAGTGCTATTGCCAGAGATCTGATTGACTTTGATGACAGAGAACAAATCTATACAGCAGAAAAGGCTATTACAGGTTTTAAAGATCCTTTCTCAGGCAAAACTGTGCCACTATCTGAAGCCATCAAGAAAAACTTGGTTGACAGAGAAATTGGGATGCGTCTGCTTGAAGCCCAGCTGGCTGTGGGAGGGATTGTTGATCCTGTCAACAGTGTTTTCCTACCCAAAGATGTAGCTTTATCCCGTGGATTGATTGACAAAGATCTGTACAGGATTCTAAACAACTGCCAAAGTACCACAAAGAACTTCATTGATCCCAGCACCAAAAAAGCAGTCACTTACATGCAGCTAAAGGAAAAATGCAGGATTGAGCCACATACTGGCTTGCTCCTCCTTCCAGTGCAGAAGAGGAGTATGTCATTCCAAGGGATCAGGCAGCCTGTCTCAGCAGATGCTCTTCTTGAGGCTGGAATTATTAAGGAATCAACAAGAAATGATTTGGAAAGAGGTGCAATCACAGTGGAAGAAGTGAGTGAGAGGATTATTGATTTCCTTCAGGGCTCTAGCTGTATTGCAGGTATCTACAATGAGGCTACTAAAGAGAAACTTGGCATTTACCAGGCTATGAAAATAGGCTTGGTTAGACCAGGTACAGCCCTTGAACTCCTAGAAGCCCAGGCAGCCACCGGGTTCATAGTTGATCCTGTCAGCAATGCGAGGCTGCCTGTTGAGGAAGCTTACAAAAGAGGTCTTGTTGGAATAGAATTTAAAGAGAAGCTTCTCTCTGCTGAAAGAGCTGTCACTGGGTACAAAGACCCAGAAACTGGAAACATCATTTCTCTGTTTCAAGCAATGAACAAAGAGCTCATAGAAAGAGGCCATGGCATTCGCTTGCTGGAGGCCCAGATTGCTACTGGTGGAATCATTGACCCCAAAGAAAGCTACCGCTTGCCAGTAGAGACAGCCTACAAGCGTGGCTACTTCAATGAGGAGCTCAACCTGATCCTCAGTGATCCAAGCGATGACACCAAAGGCTTTTTTGATCCTAATACAGAAGAGAACTTGACCTACTTGCAGCTGAAAGAGAGATGCATAAAGGATGATGCAACAGGGCTCTGCCTTCTGCCCCTGAGGGAGAAGAAGAAGGTGGTGCACACCTCACAGAAGAACACCCTTAGGAAGCGCCGAGTTGTCATTGTAGATCCAGAAACAAATAGGGAAATGTCAGTGCAGGAGGCATACAGCAAAGGCCTCATAGATTTTGACACCTATACAGAACTAGCAGAACAGGAGTGTGAGTGGGAAGAAATAACTATTACTGGATCGGATGGTAGCAGTAGAGTAGTCCTTGTCGACAGGAAAACAGGTAGCCAGTATGATATACAGGATGCTATTGATAAAGGTCTGGTGGAGAAGAAATTCTTTGATCAGTACCGTTCTGGCAGTTTAAGCCTGACGCAGTTTGCAGACATGATTTCCTGCCGTAACGGCACTGATGAGGTGTTTCGACATGAATCGGTGACTCGGTCTCCCACAGTGCTGAGTGTCAGAAGTTCTTCCTCACTGATAAGGAGTGGTTCATTCTCAGAGACCCCAGAGGAGTGCAGTCCCATTGCAGCCATATTTGATACTGAAAACTTGGAGAAAATCTCAATTTCAGAAGCTATACAGCGGGGCATTGTGGATAGCATCACCGGACAACGGTTACTTGAAGCCCAGGCCTGCACAGGGGGCATAATATGCCCCACCACCGGCCAGAGGCTCTCCCTTCAGGAAGCTACCAGTCAAGGCATCATTGACCAAAATATGGCCACGCGGCTCAAACCAGCCCAGAAGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790:ENSGALT00000020869:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=0.055
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0068115=Plectin=WD(100=5.1),PF0068115=Plectin=WD(100=5.1),PF0068115=Plectin=WD(100=4.9),PF0068115=Plectin=WD(100=5.1),PF0068115=Plectin=WD(100=5.1),PF0068115=Plectin=WD(100=4.8),PF0068115=Plectin=WD(100=3.9),PF0068115=Plectin=WD(100=5.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGCAAACCCTGGAACTT
R:
TTATGGATTCCTCCGTCCGGG
Band lengths:
358-1784
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]