DreINT0060207 @ danRer10
Intron Retention
Gene
ENSDARG00000022309 | dspa
Description
desmoplakin a [Source:ZFIN;Acc:ZDB-GENE-030131-2743]
Coordinates
chr2:1814771-1819985:+
Coord C1 exon
chr2:1814771-1815268
Coord A exon
chr2:1815269-1816900
Coord C2 exon
chr2:1816901-1819985
Length
1632 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATTTCTCGTTTATTTTTCAGACA
3' ss Score
9.01
Exon sequences
Seq C1 exon
ATGCGGAACACCAAAATTGAGCTTTTGGAGGAGGAACTGAGACGCCTCAAGGACAACCTCAAAGATCAAAACCAGAAGAACAAATCACTGGAGGACAGTTTGACTCGCTTCCGCCTGGAGCTGACCCAGTCCAAAGAGCAGCTCATATCTATGGAGGAGGTGAAGAGAACCCAGGCCAGGCAGTGCAACACTGCTCAGGAAAGCCTGGATAGTACTCAGAACCAGCTGAAGAGTTTACAAGATGAGATGTCCCGCCTTACATTCCTCATCGAGGAGGAAAAGCGCAAGCGAAGGCTGGCCGAGGAGCGTTACACCAACCAGCAGGAGGAGTATGAGCTGGCCATGCGCAAGAGACAGAAAGAACTGGAGGAGCTCACTTTGTCCAAAAGTCAATTTGAAAGAGCCATCAAAGAGAAAGAGCGGGAGATTGAACGGCTGAAATTACAGCTGCAGGATGAGGCCTCCCGACGCTCGGCAGCAGAACTGGAGACCTCAAAG
Seq A exon
GTAAGAACCCAGTTGAACCAGGACATAAGTAGCCTAAAGCAAACATATGAATCTGAGATCCACGTCACCAAGACCACAGTGCTCAAGTCGGCACAGCAGAAGGATGAGGAATCGGCATCTCTGAGACTTCAGGTGGACAGGTTAACCTCTGAGAAGAGAGATCTGGAAGAGGAGCTAAGGAAACTGCAGCTTTCTTTCTCCCAGACGGAAGCGGCACGACGGAAAGCAGAAGAGGACGCGCATCAGAAGAGATCTATGGCTGCAGATGAAAGCAGATCCAAGAAGGAACTGGAGTCACAGATTCAGATCATAATTCGTCAAAGGGAAGACATTGAAACTAGACACAAGATGGACCTGGCTGATGCAAACAGAGTTGCTCAGGAAAAGACCCGTGAGATCACATTGCTGACGCAAAATTTGCAAGACGAGACCAGGCGGAGGAAAGCAATGGAGGTTGAGAATCAAAGCCTCAGACAGTCTCAGGCTGAAATACTAGCCAAGCAGACTTCAACCACAGAGGTCATCAACAAATTAAAGGTCTCTGAGCAAGAGGTTCTCATTATAAAGAGAGAGTTGGATGTACAGAAAAGTGATAAGATGAAGTTGGAGCAGAATGCCACCAGGTTGCAGAGTCGCATAAATGAACTGCAGTCCAAGGTGAACGAGTTGCAGGCTGAACTGGAGAAAGAGAGAAGGAATAATCAGGATGAGCTCACGAGGAGGAAACGCATGGAAACTGAGTTGGATAGGGTAAATCAGACGTGCCGTGAATACACCACTACCATCAGCACTCTGCGGGTCCAACAAGAGAAAGAAAGTTCTTCTGGACGGAGGTACGAGCAGGAGCTTCGCAGTGCAAAAGACGAGTTGGAGAGAAGCCTGAAAGAGTATAAAATCACAGTAGAGAATCTGACCAAAGTCAATGCAGAACTGAAGGCTTTGCAACAGCAGCTTGTACGGGAGCAGGGCCTGGTCCGAGAGGCTAATCAGCGAAATGATTCCCTCTACAAGACTATTGAGGAGAAGAGTCGACTACTAAATGAGAGCACTAGCGAGGTTGAAAAGTTGCAGACCCTCACCCAGAATCTTACCAAAGAGCGCCTGCGACTTGAGGAGGAACTAAGGAATGTGCGGCTCGAGCGGGATGATGCTAAAAGAAGTCTGGGCACCATTGAGAGTGAAAGTGCTTCACGATTGTCTGCCATTCAGTTTCAGTTACAAACCAGCAATAACAGAGCAGTGGAACTGCAGGAGCTAATCAATGAACTGACAAAAGAGAGGGAAAGTTTAAGGGTGGAAATCGCCCAAATCCAAAAGCAGTTCTCAGAGGTATTTTATCCTGAGTGACACAAGCAATTTTCTTCTGTATCAGCTGAATCAAAAATACATCACCATTTTCAGCTAACTTTGCTGGAAATTGCTTTGCTGCCTAATATTTGTGACTTTTAAACGCACATTTTCTGCATAACACTGCACGGTTGCTGTCTTTCTACTAATTATGTTCCCTTGTTTTCCTTTGTTTTATTCTAACCACGTCTTAATCAAACAATAATTCTTGCCATGCATTATTCAATCTTCTAATGTTACTAAAAAGCATTCTTTTAACAACACCATTTCTCGTTTATTTTTCAG
Seq C2 exon
ACATCCATGATGATCCAGCGATCTGATTCAAACTACAAAGACATTGTGCAAGAGAGAGATAGTCTCTTAATCAAACTGAAGCTGCTGCAACAGGACAAAGATAAGCAGCAGCGATATGAAGAGGAGCTCAGGCGCATCAAACTTACCTTGGAATCAGAGACCAAACAGAAGCAACGTCTCCAGGATGAAATCGATAAAATCACCAAGGATTTCAAGTACTGGAAAAGCCAGTACGAGTTAAAAGAGGGGCAGATCAGACAGAGCGAGATGGATAGAGACAGAGTAGAGAGAGACCGAGCCTCCTTACAGAGTGAGATCCAAAGATTGACCGCTGAGCTGAGAAGTGTTGAGGAACGCTACAGAGGTCGTCTTCAGAGCTCAGACAAGGAAATCTCGGAGCTAATGCGTAAGAAGGAGTCTTTGGAAATTGAGCTGAGGAGATTGCAACAGCGTCCAGCTGCAACCTGGAAGCAAACCCAGACAGATGAGATCTCTAAGCCAGTTGTTGAGCAGAAATTGACAGTGCAAGGTCTTCGTGGTGAGGTCTCACTTACAGAGCTTGTCGAGTCCGACTTGCTCGATCAAACTGATTTGGACAAAATAAACCGAGGACAGCTAACCAGTAAAGATATCGAGCACAAGCTCAAATCATACCTTGGTGGCTCTGATTGTATCGCTGGCATCTATGATGAGGCCAAGGATAGAGTCATGCCTTTTTACCAGGCGATGAAAGATGGTCTACTCCGACGAGGAACCACACTGGAGCTCCTGGAGGCCCAGGCTGCCTCTGGTTTCATAATTGACCCAGTTAACAATGTCTGTATGACCGTTGAAGAAGCTTGGAAGAGAGGTCTTGTAGGAAAGGAGTTCAAAGACAAACTCCTGTCTGCTGAGAAGGCTGTGACGGGATACAAAGATCCTGCAACAGGAAAGATCATCTCACTCTTCCAAGCTATTGAGAAAGAGATCATTGAGAAAGGCCATGGAATCAGACTGCTGGAAGCTCAGATAGCCAGCGGTGGGATTATTGATCCCAAAGGTAGCCATCGAATTGATGTGGAAGTAGCTTACAGGAAGGGTTACTTTGACCGTGAGATGAATGAGATTTTGTCCTATGAAGGGGATGACACCAAAGGTTTCTTTGATCCCAACACCCATGAAAACCTCACATATCTAGAGTTGAAAAAGAGGTGCATTAAAGATCCCAAGACTGGGCTCATGCTTTTGCCTTTAAATGACAAGCAGAAACCAAAGCAGACGACAACCCAGAAGAACACACTACGCAAAAGAAGAGTAGTGATCGTAGACCCTGACACTGGTAAAGAGATGACTGTACGAGAAGCGTACCATCGAGAGTTAATCGACTATGACACCTTTCTGGAACTTTCCGAACAAGAGTGCGAGTGGGAGGAGATCACGATTGAAACATCTGATGGAAACAAGCGTTTACTTATTGTCGATCGCAAAACTGGAATCCAGTATGACATTCAGGAGTCCCTACAGAGGGGAATTATCAATAAACAAACTTTGGAAAAGTACCGTGCAGGGACTATGACGCTCACCGAGTTTGCAGCTCTGATCACTAGTAAAAGCAACAGCTCTGAGCTTGCCATCTTCTCCAGCAGTCCTGAGGATGTAGCCACCTGCAGCAGTCCCACACAGCCATCATCCCCAACCGTCCGCAAACGATTTGCAAGTGTTTCCATAACTCTATCCCCTCCATCTGATATTTTTGACGACCAGAGCCCTGTGGGAGCAATATTCGATACGGAGACCCTTGAGAAGATAACCATCCCCGAGGCTCAGCGACGTGGAATAGTGGACAACATCACCGCTCAGCGTCTTCTTGAAGCGCAGGTTTGCTCCGGAGGAATTATCAATCCCGCTACAGGCCAGAGACTATCTCTGAAAGACGCCGTACAGCAAAGCCTCATCGATGAAGACATGAGCGTCAAGCTAAAACCAGCGCAGAAGGCTTATGACGGTTTTGAGGATGTGAAGACCAAGAGGAAACTTTCTGCTGCCGAAGCCATGAAGGAAAAATGGTTGCCCTACGAAGCCGGCCAGAGGTTTCTAGAGTTCCAGTATCTCACAGGTGGACTCATAGAGCCAGGAACTGGACGCCGTGTCAGCATTGAGGAGGCCATCCGGAAAGGGTGGCTTGATGGCAAAGGTGCACAAAAGCTGCAAGATACCAGGAACTACATTAAGAACCTTACCTGTCCCAAAACCAAGCTTAAAATCTCATACAAAGAGGCGATGGATAACTGCATGGTGGAGGAGAACAATGGCATGAAGATGCTCCAGGCGACCTCCATGTCTACCAAAGGCATAAGCAGCCCCTATAATGTGTCCTCTGGGCCAAGCTCTCGCTCTGGATCCAGAGCCGGATCCCGAACAGGCTCAAGAAGTGGATCGCGCAGAGGCAGTGTCGACTACAGCTCTTCATCTGTTTCTTACACCTTCTTCTCCTCTGCTTCTTAATGCCGCTATAATTTCGATGCTTAACATGTACAATTTTAGATCTTAGAATGATTTTCTATTGAGTTCCAGTATGGGTTTGGGATGCAGACTGTAGATTGACTAGTTTGACTTGCTTTTATAGTTATTAGCAGTGATATATTTCCTTGGGTGTTTTTAGATTATGAATGCAACAGATTTAAGTGCCTTTGATTATTTTCAGAAGGGGAATTTTAGATTCATCATGACATTTAACAGTGTTTTTGTCAGTCCTTATTTGGTTTGTTTGCAATACAAAGTTGTACTGAAATATTTTACTTTGCCTGTTTTATTGACTTTTTATATAGAATTAATTTAGAAGACACTTCTATCCTAATTGACTTCCAAATATGAAAAATAAGCAGCGTTTTCACATTGTTTAGAAAGTTAGAATCATCTACCGACTTAGTATCAACATGTATTTACATATTTCAAAGTAGAAATCTGATATATTTTGAGATTTGCCTCTAATGAATGAATATTTGATTTGATTGTGTTTATATGGAGAATTTTAAACAATAAATTCTATCAAACTATTATTCTTTCTGTTCATTTTTTACTCTTCAAACCTTTATTCCAGATTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022309:ENSDART00000148460:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=NA C2=0.147
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0068115=Plectin=WD(100=5.0),PF0068115=Plectin=WD(100=5.4),PF0068115=Plectin=WD(100=5.4),PF0068115=Plectin=WD(100=5.2),PF0068115=Plectin=WD(100=4.6),PF0068115=Plectin=WD(100=5.4),PF0068115=Plectin=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCCTTACATTCCTCATCG
R:
TTTGTCCTGTTGCAGCAGCTT
Band lengths:
347-1979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]