BtaINT0052991 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3505756-3506992:+
Coord C1 exon
chr23:3505756-3505939
Coord A exon
chr23:3505940-3506834
Coord C2 exon
chr23:3506835-3506992
Length
895 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CATCATGTTTACTCTCACAGAGG
3' ss Score
7
Exon sequences
Seq C1 exon
ATAAAGACCATGTTGCCTGGTGAACATCAGCAAGTTCTGAGTAATCTGCAGTCCCGTTTTGAAGATTTTCTTGAAGATAGCCAGGAATCCCAAATATTTTCAGGCTCAGATATAACACAACTGGAAAAGGAGGTTAATGTGTGCAAGCAGTATTATCAAGAACTCCTTAAATCTGCAGAAAGAG
Seq A exon
GTAAAGCGTGGGAGCCCTTGCCTTTTCTCCTCATGGGTGTTTAGTCCAGGCTGTTTTCTATTATCACTGGGACTCTCAGTCTTAGGTATATTATGTCACTCAACCTGTGATAGGTAGAGACAGTTACTAAAGCATCAGATGGATGTTCGAGGTAGGAAGATTCAAGAAGGAATTCATTTTTTCCCAAATAATTAAGTAGTAAAAAGCTGCCAACCAAGTTGTATGACAGTGAATTCTTAATGCATCTACTTTTAACCATTTTCTCTAGTTTGCAGTGTAATGTTCAGAATGATATTTTAGTTTCAGACAAGTTTCAATTACTTTTTCATATGTCAAACTTGGATTTTTTTAAAGAATATTTTTTTTAAGAGAAGTTTTAGATTCACAGCAAAATTGAAAGCAAAGGGGAGAGGTTTCCTGTAACCAAACCTGGATTTTATATAGGGGTTGAAGGAAAAGATTTTGTCCTGTTAATGTTTGTTAAATATAAATTTTATTCCAAATTCTTGACGTCCATAAAACTTAGAGACCAAAAACACTTTAGTAGTAATACTCTAATTTTTTTAAAACATTATTCTTATAACTAATCTGCTACTAATATATTTCACATTTTTGTGAAAACAAAACAAACCAATGTATTACTTTCCTCAGACATCTTAAGTCAGATGTTGGTACTTTAAGTGGCATTAGGGAAGTTGTATTTAAGTCTTTGTAAATTGTAAGGTCCACAGTTTCAAGGTTTATATCCTTGGTGTGGGTTTGTGGTGATAACTGGTAACATTAGTCTGACTAGCTATGTCTCAGTAATGGTAAAATTGCCTTATTAATTCATGAGCAAGAACGTCCAAACGACAGAAAATGAGGAATTTTCTAAACATCATGTTTACTCTCACAG
Seq C2 exon
AGGAGCAAGAGGAATCGGCTTACAACCTCTACATCTCTGAAGTTCGAAACCTCAGGCTTCGGCTAGAGAGCTGTGAGGACCGTCTCATCAGACAGATCCGCACCCCGCTGGAGAGAGACGACCTGCATGAGAGCGTGTTCAGGATCTCGGAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237:ENSBTAT00000061451:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAAGACCATGTTGCCTGGTGA
R:
CTCCTGCTCCGAGATCCTGAA
Band lengths:
342-1237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]