MmuINT0053567 @ mm9
Intron Retention
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34224668-34226166:+
Coord C1 exon
chr1:34224668-34224851
Coord A exon
chr1:34224852-34226008
Coord C2 exon
chr1:34226009-34226166
Length
1157 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CACGCTGTGTCCTTCCACAGAGG
3' ss Score
10.25
Exon sequences
Seq C1 exon
ATAAAGACGATGTTGCCTGGCGAGCACCAGCAGGTTCTCAGTAATCTCCAGTCCCGCTTGGAGGATTTCCTGGAGGATAGCCAGGAATCCCAGATATTCTCAGGCTCGGATATAAGTCAACTAGAAAAGGAAGTGAGTGTGTGCAGGAAGTATTATCAAGAGCTCCTCAAGTCTGCAGAAAGAG
Seq A exon
GTAAGGCATGGGGTTGCTGGGTTTCTTTTCCTTGTGGGGGTTTCGTCTAGACTCTCGTACTCCCCTTGGAAATCTCAGTCTTGGGTGTATTACGTCAGTCAACTGGGACACGCATGCAAGATTGCTGAACAGTATGAAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGCGTGCGTGCAGGAGATGGAACTCAGGAGCACATAACTTCATGCATGAAGCCCTGAGTTCAATCCCAGAACCACCAATAACAATCAGAACTTCTGAGCTACGAAGATGCCAGACAAGGTCATTAATTTCTAAAACTGGAGTAACTAAAAATTGCCCCCAAGTGGTGGGACAGTCGACAGCCTCAGCTCATCTGTGTGAAGCACATTTGCTGTGCTTTACCCAGCAACACTCAGAATGGAGGTCCTTAAGGCTCACGAAAGATCTGATTCTTTTCCCATGTTAAGTTTTACACAGCACTTAAAGCAAAGTGCCTCATTTAGTTAAATTTTATTTAATATCAATCTTAGCCCTAACTCCTCATACTATTTAGAAACAAGTGATTTTATTAGTAATATTTTGTGTTTTTAAAACCTTAAAACAGTAACTTTTTTTTAAAGATTTATTTATTTATTTTATGAATGTGTGTGCACTGTTGCTCTCTTCAGATACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGATCTTAACCACTGAGCCATCTCTCCAGCCCAATTAACAAAAAATTTTTACCTGCTTTTTCCCTTTAGATTTTGGTTTAATTTAATGGTTAATTGATAGAATATAATTCACATTTTTGTGATTATTAAACAGAATAATAATACATTACTTCCTTTGGGCATTTCAGTGATGATTTGGTATTTTAAATGACTTTAGGGAAATTTGCTTGGTAATTTTTAAGTTTTAAAATTCACATTCTAAGATTTCTGTTTTAAGGTTACGTCCTTAGGGTTTGTGCTAATAGGAACCACTGGTTTGTCTCAGTAAGAACAAAGCTGGTGTAGTGAAGCTTGCACGAGAGCTTCCTGGGGAGCGGAAGTTACTTACACGCTGTGTCCTTCCACAG
Seq C2 exon
AGGAGCAAGAGGAATCTGTGTATAATCTTTACATCTCGGAAGTGCGAAACATTCGGCTCCGCCTGGAGAGCTGTGAAGACAGGTTGATTCGGCAGATCCGGACTCCCCTGGAAAGAGATGATTTACATGAAAGCATGCTCAGGATCACGGAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-Dst:NM_133833:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAAGACGATGTTGCCTGGCG
R:
CTCCTGCTCCGTGATCCTGAG
Band lengths:
342-1499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: