RnoINT0051494 @ rn6
Intron Retention
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38041779-38043003:-
Coord C1 exon
chr9:38042820-38043003
Coord A exon
chr9:38041937-38042819
Coord C2 exon
chr9:38041779-38041936
Length
883 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CATGCTCTGTCCTTCCACAGAGG
3' ss Score
11.4
Exon sequences
Seq C1 exon
ATAAAGACAATGTTGCCTGGCGAACACCAGCAGGTTCTCAGTAATCTCCAGTCCCGCTTGGAAGATTTTCTGGAGGATAGCCAGGAATCCCAAATATTTTCAGGCTCGGATATAACTCAACTAGAAAAGGAAGTGAATGTATGTAGGAAGTATTATCAAGAGCTTCTCAAGTCTGCAGAAAGAG
Seq A exon
GTAAGCGCGGGGTTGCTGGCTTTCTCTCCCCTGTGGGGGTTTCATCTAGACTCTCCTGTACTCTCACGGGAAACCTCAGTCCACTGTGACACGTATGCAAGACTACTGAGCAGCATGAAATGCGTGTGTGCAGGGGACGGAACTCAGGAGCACATAACTTCATGCTTGAAGCCCTGAGTTCAATCCCAGAGCCACCCATAGCAACCAGAACTTCTGAGCTAGGAAGGTGCTCGATGAGATCATTAATAAAACTGAAGTAACTAAAAATGCCCGCCAAGCCGCGGGGCGGACGACAGATTCTCACCTCCTCTGTGTGAAGCAGGTTTACTGCACTTTACAAAGTGACACTCAGAAGGAAGGTGCTTAAGGCTCATGAACGATTTGATTATTTCCCCGTGTTAAGTTTTACACAGGAATTAAAGCAAAGTGTTTTATTAAGTTTTCCTTAATATAAGTCTTAGTCTTAATTCGTCATACTAGTTAGAAAGAAATGATTTTATTAGTAATATTTTGTGTCTTTAAAACATTAACACATTTTTTTACCTGCTTTTTCCTTTTAGATTTTGGTTTAATTTAATGGTTAATTGATGACATACGATTCACATTTTTGTGAATATGAAACAGGATAATACATTGCTTCCTTTGGGTATTTCAGTGATACTTCAGTATTTTACATGGCCTTAGGGAAATTTTCTCAGTGCTTGTTAAGTTTTAAAGTCCACGTTCTGAGACTTGGGTTTTAAGGTTATGTCCTTAGGATTTGTGCTAATGGGACCACTGTTTTGCCTCAGTAAGAGCAAAGCGCTGGCTTTTGCTGTGAGTCTTGCACTGGGCCTTTTGGGGAGGGGGAGTTACTCACCGAGCATGCTCTGTCCTTCCACAG
Seq C2 exon
AGGAGCAAGAGGAGTCTGTGTACAATCTGTACGTCTCAGAAGTGCGCAACATCCGGCTTCGCCTGGAGAGCTGTGAAGACCGGTTGATTCGGCAGATCCGGACGCCTCTGGAAAGAGATGACCTACACGAAAGCATGTTGAGAATCACGGAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207:ENSRNOT00000044452:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAAGACAATGTTGCCTGGCGA
R:
CTCCTGCTCCGTGATTCTCAAC
Band lengths:
342-1225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]