GgaINT0079285 @ galGal4
Intron Retention
Gene
ENSGALG00000016289 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr3:86413248-86414509:+
Coord C1 exon
chr3:86413248-86413431
Coord A exon
chr3:86413432-86414348
Coord C2 exon
chr3:86414349-86414509
Length
917 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
ATGTGCCTTGTTTCTTTCAACAG
3' ss Score
0.37
Exon sequences
Seq C1 exon
ATAAAAACAATGCTACCAGGTGAACATCAGCAGGTTCTAAGCAATTTGCAGTCCCGCTTTGATGATTTTGTGGAAGATAGCCAGGAGTCCAAAATCTTTACAAGCTCTGATACTGCACAACTGGAAAGGGAAGTTAGTATTTGCAAGCAATACTATCAAGAGCTTCTGAAGTCTGCAGAGAGAG
Seq A exon
GTAAGCTGCCCTTACATAAGAGATTGCAGTTCTTCATAAATTTAAGCTCTAGTGAATTGCTATTGTTGATATTGATCACGTGGTTTTTTGAATGGATAAAGAACCACTGTTTTAACATTGTGTACAACTATACTGTATAAAAGATCTAAGTTTTTGTTAGCTTTGTATATGTTTATTTACGTAAAAATATTGAAGTGTTAACATATGTGGTACAATAAAATGTAGCCCCAAGATTTTTGTCTGTGTACTCCAGAAGACTGTTTAGTCAGGTTTTCCTGGCTGTTTCTGGATGTTTGAATGCAGACTGACAATTTAATTGAGCTCATAGCAGAATTAGATCATTTCTAATGCAAGAAATGTTTCCTAGTTATTTGTTTAGCTCTGCAGAATGCCCATAGTTACTGCTCTCTTAACTGTTTTCAAATGCATCAAGCACAAAAAGCTTAAAATGTTCGTTCTGATTTACTGTCAAGTATCTGGTGAATTAAAGGAATGCAGTAGTTCAAAACTGATTGGTGCATTAGCGTAGTTCACTATACTTAAAAAATGACATGCTGTCCTGTCCCTCTGAAAGAGAAGATTCAAAAAATATTCCTTGAGATTTCCTATAGTATTGTGCCTGATGTGTCTGGCTGAAAGAATCAAGCACTGAATTTATTAGCACTGTCTGCATAAGGGAAGAATGATCAATGATGTATGCTGATTTCTGAAGTGTGTGAGGAGGCGATCTAATGCTAGCTAAAATTTTAAAGCACCTAAAATCTGTTTTATAGCCAGAATTCTTATGAAAATTGGTGGCATTTCGGTTGTTCATAAAAAGGCCTGCAGAATGATGGCTTTTTAAAGTCTTTTGTGAGAAGACATGGAGAAAATGACAAGATGACTTTGTTTGCTAAAATGTGCCTTGTTTCTTTCAA
Seq C2 exon
CAGAGGAGCATGAAGAATCTATTTACAATCTGTACATCTCCGAAGTCAGAAATATCAGACTTCGGCTGGAGAGTTGTGAGGAACGGTTAATCCGACAGATCCGGACCCCAATGGAAAGAGATGATCTACACGAAAGCGTCTTTAGGATTTCAGAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289:ENSGALT00000026264:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACAATGCTACCAGGTGAACA
R:
TCTTGCTCTGAAATCCTAAAGACGC
Band lengths:
342-1259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]