DreINT0004291 @ danRer10
Intron Retention
Gene
ENSDARG00000098631 | CABZ01044277.1
Description
NA
Coordinates
chr13:1407419-1409204:+
Coord C1 exon
chr13:1407419-1407602
Coord A exon
chr13:1407603-1409046
Coord C2 exon
chr13:1409047-1409204
Length
1444 bp
Sequences
Splice sites
5' ss Seq
GAGGCGAGT
5' ss Score
2.28
3' ss Seq
CTCCCTCTGGTGGCCAACAGAAG
3' ss Score
5.97
Exon sequences
Seq C1 exon
ATCAAGACGCTGCTGCCCGGAGATCATGAGCAAGTTTTAAGCGATCTTCAGGCTCACTTCCAGGACTTCCTGAGGGACAGCGATGAATCTGAGGTGTTCACAATGGCAGACTGTGCTCAGCTGGAAAAGGAGGTTCTGGCCTGTAAGGAGTATTATGAGGAGCTTCTCAAATCTGCAGAGAGAG
Seq A exon
GCGAGTTACTGCATGCACACTCACACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACACACTCACTCACCCACTCACTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATGTTCATACACTCACTCACTCACTCACTCACTCATTCATTTATTCATTCATTTATGTTCATTCACTCACCCACTCACTCACTCATTCATTTATTCATTCATTCATGTTCATTCACTCACCTACTCACTCAGTCACTCACTCATTTATTTATTTATTCATTCATTCATGTTTATTCACTTACCCACTCATTCACTCACTGATTCATTTATTCATTTATTCATATTTATTCACTCACCTGCTCGCTTACTCACTCACTCACTCACTCATTTATTCATTCATTCATGCTCATTCACTCACCTACTTACTCACTCATTCATTTATTCATTCATTCATGTCCATTCACTCACCCACTGACTCACTCACTCCTTCATTTATTCATTCATTCATGTTCATTCACTCACCTACTCACTCACTCACTCATTTAATTATTCATTCATTTATGTTCATTCACACAACTACTCACTCACACACTCATTCATTTATTCATTTGTTCATGTTCATTCACTCACCTACTCACCTACTCACTCACTCACTCACTCACTCACTTATTCATTTATTCATTCGTTCATGTTCATTCACTCACCTACTCACTCATTCATTCATTTATTCAATTATTCATGTTCATTCACTCACCCACTCACTCACTCACTCACTCATTCATTTATTTATTCGTTAATGTTATTCACTCACCTACTCACCTACTTACTCACTCACTCACTCACTCACTCACTCATTCAATTATTCATTTATGTTCATTCACTCACCTACTCACTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCAGCCATCCATCCATCCATCCATCTGTCCATCCATTCATTCATTCATTCATTCATCCATCCATCCATCCATCCATCCATTCATTCATTCATTCATTCACTTTTCTCTCACTTAGATGCGTCACATGTGAGAAATAGCAAATGATCTGGTGACTCATTCATTCACCAACTGATTCATCCATCCATCCGCTCATTCATTTATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTTATTCATTCATTCATTCATTCATTCATGTTCACTCACTCATTCACTCACCTGCTCACTCACTCATTCACCATTCATTCATTTTCACTCACTTAAATGCGTCACATGTGAGAAGTAGCATATGATCTGGCAGTTCAACTATTGATCATCTTGAATGCATATAATCCAGTGCAGCTGCTATTCAAATGCTTTTATTGCGAGAACTCGTGTTGAATGTGTCTCCCTCTGGTGGCCAACAG
Seq C2 exon
AAGAGCACGAGGAGTCCGTCTACAACCTCTTCATATCTGAGGTGCGCAACTTCCGCATGCGTGTGGAGGGACACGAGGAGCAGCTGATCCGCAAAATCCGAACCCCGCTGGACCGAGACGACCTGCAGGAGTGTCTGCTGCGCATCACTGAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098631:ENSDART00000159454:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF101864=Atg14=PU(5.4=18.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGACGCTGCTGCCC
R:
CTCCTGCTCAGTGATGCGC
Band lengths:
342-1786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]