BtaINT0054895 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105456502-105457534:-
Coord C1 exon
chr11:105457452-105457534
Coord A exon
chr11:105456609-105457451
Coord C2 exon
chr11:105456502-105456608
Length
843 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
3' ss Seq
CACCTCTTGTTTGTTTGCAGTTG
3' ss Score
8.98
Exon sequences
Seq C1 exon
ACCCAAGAAGCTCCGCTTCCACCCGAAGCAGCTGTACTTCTCGGCGCGGCAAGGGGAGCTGCAGAAGGTGCTGCTCATGTTGG
Seq A exon
GTAGGTGGGCGAGCACGCCTCTGTCGTCGCAGGGCCCGCCGTGTCCCACCCTGTCCCATTGCTCTGGTCGGTGCATACAGGCCGCTCCTGGGGTTCAGCCTGTTCGCCATGTTCACGCTCAGTCAAGGTGGTGGGTGTGCTTGCTTGGAATTAGCAGGAATGAGGTGTGTGATGGTTAAGAGGTGCTGTGGAGTCAGTAGGGGCGTGGTCAGGAGCCAGGCTCGTGCCGTGTGGACCTGCCTGCGTCTTCTGTGCAGAGAGCAGCCCGGGACACCCGTGCTGTCAGCGGCCTCCTGCCGCTGTGGTTCTGACCCGCCGGGTGCTGAGGAGCAGGCAGCGCTTTGCTTCTGAGCTCACAGCTTAGGCTTGACTTTTGGGCTGGAGAAGGTGGACGCAGAATCTGTTTACTTGATAGGAAGTTAAGAAACAAGTGTAGCAGTTTGTCCTGGGGTAAAAAAGGTTTTATGTTGACCAAGGTGGCAATTTTTATCATTTTTCTGTTAGACCTTGTGCGGTACTGAGGTCGCCTCACTGTTCTGGGGTTAACTCATGATCCGTGTCCATGCCAGGCTGGGAGCTGCGCTCAGTAATTGCCTCCCCTTAGGGCCTGGCCTGGGGGTCCTGCTCCCATGGAGTGTCCATCCTGGGGCCCCTCCAGCCTCATGTTGGGGCCGAGGCCGGCTGGGGGACACGGGAGGGCCAGGGGCCCAGAGTTAGCAGTGGTGCTGGGGCCTTTGATTGCAGCCTGCCTGCCGTCCCCCGGGGCCTCCCCACCCCGGCCCGGCCCGCCTGGGTGCTGGGGTCGTGCCTGATGAGTGAGTGGCACCTCTTGTTTGTTTGCAG
Seq C2 exon
TTGACGGGATCGACCCCAACTTCAAGATGGAGCATCAGAACAAGCGCTCGCCCCTGCACGCCGCGGCGGAGGCTGGCCACGTGGACATCTGCCACATGCTGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148:ENSBTAT00000016118:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0002325=Ank=PU(68.8=61.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development