MmuINT0055971 @ mm10
Intron Retention
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24836396-24837658:-
Coord C1 exon
chr2:24837576-24837658
Coord A exon
chr2:24836503-24837575
Coord C2 exon
chr2:24836396-24836502
Length
1073 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
AAAACTGTGTTTGTTTACAGTTG
3' ss Score
7.81
Exon sequences
Seq C1 exon
ACCCAAGAAACTTCGCTTCCACCCAAAGCAGCTGTACTTCTCTGCCAGGCAGGGTGAGCTGCAGAAGGTGCTTCTCATGCTGG
Seq A exon
GTGAGTTGCTCCACCTGAGGCCATAGAAGGAGCACCCGAGGCCTTGTTAGCTACACCTTTTCCCATGAGCCCCGTCTCACTGTCTGATGTTTGTAATTCTTTGATTCCTCTGATTAGCAAAAGAAAGTGTTCCCTGGTATTTAGTCTGCCTCCTGACACTAGAAATGTCCTCTGTGCATCTCTAGGTTTTAAAAAGGAATTAGATGATGATTAGATGAAGCAGAAGTGCATGTAGGAAAAGCAGCATGACCTGGTCCTGTTGTGACATGTTGCAGGGAAGAGCCCAGTGCTTGTGCTGAGAGGACAGTGCTGCTGCACACAGTCACCCGGGAGAGGGCTGCTGTGTGTGCCTCTGCAGTGTGCTGGCCCGGTTACAGCTTGCTACCTGAGCTCAGAATTCTAGGCTTGATCTCTAACGTCCATCTTTGTTAGGTTGAGAGCAAGAGTAAAGAGCTCACTGACTGACAGCAAGTCATGAAAGAAGCTGAAGCTTGTTTGAGGGGAAAGGGGAAGACGAGAAAGTTCACTTAATTTACAAAAAAATTAGTTTTTACCCTTCATGGACTTCATGTAGTATTAAATTGCTTCATTACTTTTGTGCATGGTACTTTGGGTAAATGTCTAGAAAAATGTACAATATTTGGGAAGCTAAGGTAGGGGGATTTCAATGTTAAGGGGCAGTCTGCATTACATAGTGAGGTTTGTGTCCCCCAAAATAAAAATGAAACAAAAAGTAAGTGTCTGAGTTTCATGGTCATACTTGTACTCCTGAGACCTGTCTGTTCTTAGAGCTGTTTCCCCTTAGCACTGTTTGCATGAGCTTGCAAGAGGCATGGTGAGGTACTCTGACAGACCTGCTGGGGAGGTTGATGTGGGGCTGGTATAGGTTCTCTTGGTCCTAAAGTACAAGTGGGTCTGACTCCTGCCTGCAGACAGGCCATTGTGGTAAAGTGTCTACATCATGGCTCCAGAGTTTTGCTTTTTATCTTGAAGATGTCCATGTCATAAGCATCTTTGTGGAAGGACATTGTGGTTGCGTATGATATAATTGATAAAACTGTGTTTGTTTACAG
Seq C2 exon
TTGATGGAATTGATCCCAACTTCAAAATGGAGCACCAAAGTAAGCGTTCCCCATTACATGCTGCTGCGGAGGCTGGCCACGTGGACATCTGCCACATGCTGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893:ENSMUST00000147147:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.395
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(17.9=58.6)
A:
NA
C2:
PF0002325=Ank=PU(67.7=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAGAAACTTCGCTTCCA
R:
GCATGTGGCAGATGTCCACG
Band lengths:
182-1255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types