HsaINT0054735 @ hg19
Intron Retention
Gene
ENSG00000181090 | EHMT1
Description
euchromatic histone-lysine N-methyltransferase 1 [Source:HGNC Symbol;Acc:24650]
Coordinates
chr9:140674087-140676849:+
Coord C1 exon
chr9:140674087-140674169
Coord A exon
chr9:140674170-140676742
Coord C2 exon
chr9:140676743-140676849
Length
2573 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
AAAACTGTGTTTGTTCACAGTGG
3' ss Score
7.24
Exon sequences
Seq C1 exon
ACCCAAGAAGCTTCGCTTCCACCCAAAGCAGCTGTACTTCTCCGCCAGGCAAGGGGAGCTTCAGAAGGTGCTCCTCATGCTGG
Seq A exon
GTAAGTGCCTTCCTGCGGCCCGGGCACATGCAGCCGGCCCTGTGGCACTGAAAGAAGCCGAGAGCAGTTGTTACTCCTTCCTCAGGAGGCTGGTCTCGTTTTGGTTTTCTGTTTCTGTGTCTCCGAGTTCTCTGATGAGTGAGAATAGGTTGCCCACTGGTGTTGAGGCTTTTTATGGTGTTCATATCCAGTTACGCAAGATATTAGAACTATTCTCTACGAAGTTCTAATTTTTAAAAAGGAATTGGTATGTGATTATTAAATCAAGCAGAAATAGAGATTAAGGAAAAGCAAAACTAGTGAGTTGTGGCCCTGAGATGTGTGGTGATGACGCTGAGATGTGTGGTGATGACGCTGAGATGTATGGTGATGATGCTGAGATGTGATGACGCTGGGATGTGTGGTGATGACGCTGAGATGTGTGGTGATGACGCTGAGATGTGTGGTGATGACGGCATCACTGAGATGTGTGGTGATGACGCTGAGATGTGTGGTGATGACGCTGAGATGTGATGACGCTGGGATGTGTGGTGATGACGCTGGGATGTGTGGTGATGATGCTGGGATGTGTGGTGATGACGCTGAGATGTGTGGTGATGACGGCATCACTGAGATGTGTGGTGATGACGCTGAGACGTGTGGTGATGACGCTGAGACGTGTGATGACGCTGGGATGTGTGGTGATGACGCTGGGATGTGTGGTGATGACGCTGAGATGTGTGGTGATGACGGCATCACTGAGATGTGTGGTGATGACGCTGAGACGTGTGGTGATGACGCTGAGACGTGTGGTGATGACGCTGGGATGTGTGGTGATGACGCTGAGATGTGTGGTGATGGCATCACTGAGATGTGTGGTGATGACGCTGGGATGTGTGGTGATGACGCTGGGATGTGTGGTGATGACGCTGAGATGTGTGGTGATGACGGCATCTCACTGAGATGTGTGGTGATGACGCCGAGACGTGTGGTGATGACGCCGAGACGTGTGGTGATGACGCCGGTATGTGTGGTGATGACACTGGGATGTGTGGTGATGACGCTGGGATGTGTGGTGATGACGCTGAGATGTGTGGTGATGACGGCATCTCACTGAGATGTGTGGTGATGACGCCGAGACGTGTGGTGATGACGCCGAGACGTGTGGTGATGACGCCGGGATGTGTGGTGATGACGCTGGGATGTGTGGTGATGACGCTGAGATGTGTGGTGATGACGGCATCACTGAGATGTGTGGTGATGACGCTGAGACGTGTGGTGATGACGCTGGGATGTGTGGTGATGACGCCGGGATGTGTGGTGATGACGCCGAGACGTGTGGTGATGACGCCGAGACGTGTGGTGATGACGCCGGGATGTGTGGTGATGACGCTGGGATGTGTGGTGATGACGCTGAGATGTGTGGTGATGACGGCATCACTGAGACGTGTGGTGATGACGCTGAGACGTGTGGTGATGACGCTGGGACGTGTGGTGACGACGCTGAGACGTGTGGTGACGACGCTGGGACGTGTGGTGACGACGCTGGGACGTGTGGTGACGACGCTGGGACGTGTGGTGATGACGCTGAGATGTGTGGTGATGACGGCATCACTGAGATGTGTGGTGATGACGCTGAGACGTGTGGTGATGACGCTGAGACGTGTGGTGATGACGCTGGGATGTGTGGTGATGACGCTGGGATGTGTGGTGATGATGCTGAGATGTGTGGTGATGACGCTGGGATATGCGGTGATGATGCTGAGATGTGTGGTCATGACGCTGGAATGTGTGGTGATGACGGCAGTCGATGTTTCACCTGTGCTGATCGCAGCAGCTGTGGTGTGGACAAAGTAGGCTTCAGCTATAGGTATTTTATAACAGGCAAACCGATTGCATTAGATTTCTAATACGCAAAAGCATACTTGTTAGAGAGCCTTCCCAGTGATAATTTGGTCTCTGAGCTCATAGCTTTAGGCTTGATTTCTCTGACGTTCATCGTCTCTGGGTTGAAAAGGATGATTAAGAAGCCCTTTACTGGACAGTACGTCAAGTAAAAAGAAGTGAAACTATTTGCTTTTAAAGAAAGGTTTATTTATGTTGACCAGCAGTTTTAATCATTTTGTCATGGACTTCACAGGACACCTGTGAAGGTCACCTCACTGCTCCGTTGCTCACCGTCCTCTCAGACCTCCTGGGAATTGACCGATGCTCAGGCCTCTGTCCCCGGCCTTGCTTGCTCCCCTAGGGTGTGTCTGCCCTGGTCAGCCGCCTCACTGGGCCTGGGGCGGCCATGGCCAGGCCACACAGAAACACAGAAGGAACCTCAGAGTTAGAGCAGGGTGGTAAAGGGAAGAGCGTGCCTTGCCGAGTTAGTTCTGACAGAGGGACCTGCCTGTTCAATTCCGCAGGAGACTAGCACACTCAAGTCTCAAGTCCAGAGGATGGTGCTGTGGGCGGGTTCCGGCGTGGCTCGAGGTGGCTGTTTATGTGGAGGATGGTCATTTGTGAGTGCTTGCCAGCCATCGTGACAGTCCTGAGCTGGAGTCTGTGGCTACATCTGAAATCATTAATAAAACTGTGTTTGTTCACAG
Seq C2 exon
TGGACGGAATTGACCCCAACTTCAAAATGGAGCACCAGAATAAGCGCTCTCCACTGCACGCCGCGGCAGAGGCTGGACACGTGGACATCTGCCACATGCTGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181090-EHMT1:NM_001145527:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=NA C2=0.422
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(17.9=58.6)
A:
NA
C2:
PF127962=Ank_2=FE(36.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)