DreINT0061758 @ danRer10
Intron Retention
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28904462-28904733:-
Coord C1 exon
chr5:28904651-28904733
Coord A exon
chr5:28904569-28904650
Coord C2 exon
chr5:28904462-28904568
Length
82 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TAAGTGTGGTGTCTAATCAGTGG
3' ss Score
4.24
Exon sequences
Seq C1 exon
GTATAAGAAATTCAAGTTGCCCCCAAAGCAGCTTTATTTCTCTGCTAAGAGAGGAGAGCTGCAAAGAATCTTGCATATGCTGG
Seq A exon
GTAAGGCCCTTTTCAAGCAGTCATTGTTTTATACATGTTGATACAAATGACTTTGTGATTGATAAGTGTGGTGTCTAATCAG
Seq C2 exon
TGGAAGGTGTGGACCCAAACTTGCGGATGGACAGCGAGAAGAGGAAGACTCCACTACATTGTGCTGCTGAGGAAGGCCATAAAGACATCTGCCATGTGCTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157:ENSDART00000126018:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(17.9=58.6)
A:
NA
C2:
PF127962=Ank_2=FE(36.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAAGTTGCCCCCAAAGCA
R:
CCAGCACATGGCAGATGTCTT
Band lengths:
176-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]