GgaINT0126649 @ galGal4
Intron Retention
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:2057839-2059300:+
Coord C1 exon
chr17:2057839-2057921
Coord A exon
chr17:2057922-2059193
Coord C2 exon
chr17:2059194-2059300
Length
1272 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
3' ss Seq
ATCTCTGCTCTCTTTTTCAGTGG
3' ss Score
11.51
Exon sequences
Seq C1 exon
ACCCAAGAAGTTACGGTTCCATCCAAAACAGTTGTACTTCTCTGCGAGGCAAGGAGAGCTGCAAAAAGTCCTGCTTATGTTGG
Seq A exon
GTAGGTGGCTCTTTCCCAGGACACAGTGTGTCTGGCAGTACTCCCAGCTCCTGCCAGGCAGCTGCCAGAGCCCAGTTCCCAGCATGGCAGCACGTCATATTCCCCACTGCCCCTTGTGAGTGGTGTTGGGAGGAGAAAGCCACTTTTGCAAGTAATGTATCATCAGAAATGGCTTCATCTTTCTGTGAAATGTGGACTTGCTCCCAGCTTGCTTCTGCATTTGGACACAGTTTTATCCAGAGAGGCTCTCTCTACCCCCAAATGACCTATGTTTGATTTTTCCAATCCAGTAGAACTTTGCCTCCCCGTGCAGTGGGATGGTTGGTTATTTGCATCCAGTGGAGAGGTAGAAAGATGGGAGTGTGATTAAATTAAGACCAGTCAGCAAGAAAGCGGAAAAGAAGAGAACTTCAGTACAGAGGGCTTTATTCTGGGGGTACGTAACTGTCACCAGATGACTTCCAGCTGGCTGGGGTTGTTTTTACCAACAAATATTCCCAAGGACTATCAACCTGTGAAGGACACAGTGGGATCATTTCCCTTCCACTCCAGTACTTTGCGGTACATTTTTGGATGCTTTCTGTTCTTTTGCATTTATTACTCTTTTTTTTTTTTTCTCCTAGCAAGTATTAGTTTCATTGTTCCTGTCTTCAATAGCACCAAAATGTTATTCATTGATATTTAACTACGGCCTCATCGTATGCAACATGTTATCATGCCCAGACATCTTTGTCTGGCTGTCATCATCATCTGTCAGTCTTTGCACAGCTGTGAGAATTTCTGGCCAGATCCCGAGCTTGTGTTGGAGCTCCATCCTCTTTGCAGCCCTTCTGCTTACAGCGATGCAAAAAGGATCACTGATACTAAGTGCAGTTAATCACAGTCCTCAGACAATAAAGCTGGGTGGTGCTGACACTCTGTTGTTTCCAACAGCAGTTCTTTTCTTTTTTTCCTTTTTGCCCTTGCACGGTGTTGATTTTATTTTTTGCAGTGAGAGAAGGGGAATGAAGGAAGTGGTTTGTGTAGAAATGGTAATGCCTTAAAAGTATTATATTCCATGATGTTTCTGAAGCTCCTTGCTTGAGGGCTGTTGCATACCAGATGTCCATGGGACTACCCTGAGAGCTTTCTGGCTTGCGTGTGTAGTAAGAAGGGCTGAAGATAGGCTAGGGGAAAGTCTTTAAAAAGCCTTCAGTAGGGACCTCCTTCTCTTTTTACCCTTTTCTCTGATCTCTGAATTGTGGTTGATGGCATCTCTGCTCTCTTTTTCAG
Seq C2 exon
TGGATGGAATTGACCCTAATTTTAAAATGGAGCATCAGAGTAAGAGAACCCCTCTCCATGCTGCCGCTGAGTCTGGCCATGTGGACATCTGCCATATGCTGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0002325=Ank=PU(66.7=61.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAGAAGTTACGGTTCCA
R:
CTGAATCAGCATATGGCAGATGT
Band lengths:
190-1462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]