BtaINT0055761 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85525481-85525822:-
Coord C1 exon
chr10:85525680-85525822
Coord A exon
chr10:85525585-85525679
Coord C2 exon
chr10:85525481-85525584
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCTCTCCTCCCTCCCCCAGTGG
3' ss Score
10.88
Exon sequences
Seq C1 exon
ACGGATCAATGTGGGCTCCCGGTTCCAAGCGGAAATCCCCTCGATGAGGGACCGTGCCCTGGCTGCTGCAGACCCCCACAAGGCTGACTTGGTGTGGCAGCCATGGGAGGTCCTGGAGAGCAGCCGGGAGAAGCAGAGGCAAG
Seq A exon
GTGAGCAGGCACGATTGGGCCATGGGTGGGGTAGGCCCCAACCCCATCCGGCTCTGCTCAGCTCTATAAGTGCTTTTCTCTCCTCCCTCCCCCAG
Seq C2 exon
TGGAAGACCTGCTGACAGCTGCCTGCTCCAGCATTTTCCCTGGAGCCGGCACCAACCAGGAGCTGGCCCTGCACTGTCTGCACGAGTCCAGGGGAGACATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272:ENSBTAT00000012216:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PU(79.3=93.9)
A:
NA
C2:
PF0144819=ELM2=PD(19.0=31.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCCACAAGGCTGACTT
R:
CAGGATGTCTCCCCTGGACTC
Band lengths:
177-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development