GgaINT0060213 @ galGal4
Intron Retention
Gene
ENSGALG00000009282 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr5:25427555-25428645:+
Coord C1 exon
chr5:25427555-25427697
Coord A exon
chr5:25427698-25428541
Coord C2 exon
chr5:25428542-25428645
Length
844 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TGGTATCTCTGTGGGAATAGTGG
3' ss Score
1.97
Exon sequences
Seq C1 exon
GCGTATAAATGTAGGAACTCGCTTTCAGGCAGAAATCCCTTCACTCCAAGACAGATCTCTGGCAGCAGCTGATGAACATAAAGCAGAGCTTGTGTGGCAGCCATGGGGTGACCTGGAAACCAACAGAGTCACCCAACAGAATG
Seq A exon
GTAAGAATGTGGAAGGCTGGTACATAGGGCTGAGTGCCACAGCTGTAGTAGAAGTAACCACATGTCTACTATAGACAGAACTTAAAATAGAGCTGCCAGTTATTATGACATATTTAAATGGTCTTGAAAGCAATCTTAGGAGTAAAACTTATTTTTCTGGATTGTATGTGGGGGGCTGGGAGGTTGATATGATTTTATTTATTAATTGAGATAAAATGAGATCATTATTACTAGTCAAAGAGAGATTTGCATTCAATGAAACTTCCTTGTCTTTGTTAACATTTAAATGCCACGTGTAGTCAACTTTTAAACTGATGCTCTAGATGTAATAGTATTTGGGAAAATCAAGTTGTAGACATTAGGAGGAGGAAGCAGAAGCTGTGGCCTAGTTAGCAGACTGAGTAGCTTTCTACTTTTGGTGCACGCAGGCTGTGGCATGTAGAGATGCTGAAGAGGGAATGTGGGTGGTCTTGGAAGAATTTTTTCTTGATAAGGAGAAGAGGGGTATTATGAAATGAAAACTGTGTAAAGATCACAGAATAGAGGGGGGATTAAAAAATCTGAGGTGAAGGGAGATTGAAGACATTACAGGAGATGAAAGTTGCAAAAAAATTCCATGTATAAATAGTGCCGTGTGTGGCACTCTGCTCTGTGACCTCTCAGTCTAGTGAATTCCTTTGTCCAAATCTGACCCAAGTAAATTTGCAAGGTCACTCATCATCTTGGTTTTATCTTCTGTTATGTCTACTTCTGCTTCAAAAGATCTAATTAGTCATGTGAATTCTCTAGGAAACTTGATTTTAATCTTCTAATCTCAATTTGTTTGGTATCTCTGTGGGAATAG
Seq C2 exon
TGGAAAGCCTGCTAGCTGCTGCCTGCTCAAGCATTTTTCCTGGGGGTGGAACCAACCAGGAGCTGGCACTGCATTTCTTACATGAAGAAAAGGGAAGCGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282:ENSGALT00000015102:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PU(79.3=93.9)
A:
NA
C2:
PF0144819=ELM2=PD(19.0=31.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTATAAATGTAGGAACTCGCT
R:
CAGAACGCTTCCCTTTTCTTCA
Band lengths:
247-1091
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]