DreINT0062606 @ danRer10
Intron Retention
Gene
ENSDARG00000053864 | elmsan1b
Description
ELM2 and Myb/SANT-like domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-131121-13]
Coordinates
chr17:37382409-37385982:+
Coord C1 exon
chr17:37382409-37382551
Coord A exon
chr17:37382552-37385878
Coord C2 exon
chr17:37385879-37385982
Length
3327 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTAC
5' ss Score
2.28
3' ss Seq
ATTCAGTGTTTTCATTGCAGTGA
3' ss Score
5.54
Exon sequences
Seq C1 exon
TCGGATAAACATTGGAGTGCGGTATCAAGCGGAGGTCCCCGAGCTGAGAGAGCGATCGGCAGCGCTGCACGACCTACACAAGGCTGAACTGGTGTGGGCGCCACTGCCTGACCTAGAGGCCAGTGCTCAGCAACAGCAAAAAG
Seq A exon
GTTTACTACTTACACAATACCATGCTAATTCTCACATTTAATTCATGCCAATGAATGAAAAGAATCTGCTGGAAAATGTTTTGCTGGTTACACTTTAGAATAATGGCCCATACTAACATTACCGAAGTATCAATAATTTTGTAAAGTATTTATTAATCATAGTTAATCATTATTAAAGTACAAAGTTGTGCTTGTTAACATTAGCTAATGCAGTGTGATTTGATATGAACTAACATTCTTTTACATTAAAGGTGCAGTAGGTGAAAATAGTAACGGGTTAGCATTTTATCTTTGGACGGCAGGGGAGGGACTGTGTTTCAAAGCCATGCCTCCTGAAATCGCGAATGCCTGCACTGTGACATGACAGCAGACGACCCACCAAAAGTTCATGTCATTCGCCAGTTAGAAATGTAGTCAGTGGTTGGCTGGTGGTGTGCAGGAATTGCATTTATTAATAAGCCACACTTCCATGCTTTTTCAGAACCAATATTCAGAGTAGCATGGTAAACAGTATAGGGAGGCTGTCATTGTTCAAAAATGACCCAGTGTGAATATAAAAGCAACTTCAGCTCAGTAAAGCAGACTAGGCAGAATAGCGCTATTTACCGATGTTTTGTTGTTAAACTAAATAAAAATCTACACTATCAATGCTGTAAAATAACCTTATGAAACTAAAAAAAAGTCACATTAATCTGGAAGTTACTTTGATTTCAGTGGCTGAACAACACCTCCATGCATATGCATATAACCCATTCAAAACACAACACAATCTTCATCAGCTTTGGGGGACTGAAAGAGTTATAACACAGAACAATACCTGTCTAACAGAAATACTTCAGCCATAGTGTTGTCCTTCCTCCAGCACGCAAAAGTAACTCCAATATTGATTTAGGATTTTAAAAAGTTTCAATTCGGCATTTGATTTTACTGTTATTGTCTCATCTGCACGTGAACATGGCGTGCATGTGCTAATGGCAACCATGAGTGAACAGAGATGCACAGAAGCCCAAATCTACGTTTGCTGACAGGCAGTTTGGGCTACTTATCAGAATTATGGGAGATGTCGACCCGACAATCTTTAATTAACATTTTTTAGTTCTATCCCTTACTCAGAATATAAACATACATATAAATATATTTAGATCATTTACATTAATCAGTACTATTGGACTGTGAAGAGACTTTCAACCAGTTTAACAAAAAATGTTTCTGAAGACAATTACCTACTGCACCTTTAAGTAGCATTAACAATGTTAAATAATGTTAACATGAATAAATGCATTACTAATCATTTGTTCATATTAGTAAATATATTAAAGTAAGGGACCATTGTTTTAAAGTGTTACCATTTTGCCAATTTTAATACGTTCTTTAATATGAGATGGGTGTCGCACATACAGGCGTTTTAATCTTGCCGGACGGTGATTCGAAAAATATTGTGAAATAATAAATAAAAATTATTTAAAAAAATTAATTAAGTTTATTTACTAAAGTATTTCATCCTAAAATGAACGGACATCTTGGGATGGAAAAAAAGTAGAGGTGTGTAAAATGATATTTTCTGTTATTATAATGTCTGCTAAATTATTAAAATTGTTGCTTTTTTTGTAAGCAAGCATTTACTGTGTGATGAAGTCTGTTAAAATGCCTATAAATTAGGATTTGGCATCAAAAATGCATGGTATGGGTTTTTGTTTAAATATTTGTGTGAAAAAAAGCATTAATCACAAATGAAAGCGTTTTTTATACAGTAGATTAACAGAAAAAGAAATTGGTTTTAGCAGACTTGCATTTTAAACGCATATTTCTCATTTAAAATGTTTTTTTTTCTCCCAGAGTAAGAAATTCATACACACAGAGCATGTTTTCCTTTACAATTTGCCATTTTTTTGGGGCAACGAGAATAGGTCAACTATAGTTGTTTTATTATTATTCAGTTATTATTTTTTTCTTCATTTTTAAAATGTAAGAGGAAGGGTTGACAAATAGTGTCACATTTTTCAGTATTACCGCAAACTGTATACCTAGTGTTTTCTATTTGAATAGACTGCATTAGATAGAGAATAGAAAACTTTTTTTTTTTAACAATTTCTAGCCGCTGCGTCTCACATTATTAGAAGCAAAGACATGTTTGATGTGAATTGAGTCCTAGCACTGCAGTGTTTCTTTTGCCAATTTATTTTTTAACAAATCATTTAAATCAACTATTCAGCGACCTATTCGTAATGATTGTCATTTGTTTACCTTCTGAATGAATCGTTATTGATTGAATTGAGTCAATGAATCACTCATTAAGACATGGGCTTATTTAAAACAGGTGTAATCCTGGTTTTGATAAAGAAATTAAATGTTGTCGAAATATTATTAGAAAAACATTTAAATACTCAACCTGAAATGAGCTAGTATCTTCTTTAATGAAACTACCTTTCCAATTTTTTTGTGAATTATATTGTGCCTAGTAGGAAAGTCCCGATCAGTTTTTTTTTTTGCCTCTGAATCATTTAAGTATCTACCGATAATAAAACCTGATCCGTTACTTCTGTAATACATAAAAAAACAATAAAGAAGAGCGCAGAAACAGATCCAGGATGTTCCTTATTTTGTATTTAATCCACCTTAATTTAACATTCAACAACTCTGTTAACAAACAGAGCACTTCTGTAAAGTAGCTTGAACCATTAAGTAATAAAAAACATAAATTCTTCACTTTCAGACTTAAGTGAAACAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAACAAATCTAATATAAAAACAAATAGCATCTCAACTTAACCCGGCAGGCAATCCCAAGTTTACATCTCACAGTTTGCTATGGCAATGTTGTCATCATCAACTTTATAACACCTCCAGAGCACAGACAGACTCACGTTTTCCGCTTCAAGCTGCTTCCATGTTCTACTTTGGAAGCGTTTAACCAATAGCCTCTCTGCAACAAAGTGATGTCATGCCGCACGCATTGCTCTTTCTGTGTGAAGTCACGAAAGAGATCTAACTCTGTGCCACCGCATAACTATAGATGTGTTCAAAAATGTATTCGAGTACTGATTGGGAGGTAACAGCCAATTCAGATCGAATCTAAAATCGCGTGATCTGGCCTGATTTCTGATCACGTGATCGGATCTGGACAGTATTGGTACCAGTGTAATTGTGAGCAAATTAACGTCTAACAAATTTGGTCCCCACAGTGGTACATTTTTACTAATTCCCCCGTAACCTAATTTGAGTCTGACACCTGTGCTGTAGACTGATTCAGTGTTTTCATTGCAG
Seq C2 exon
TGAATGACCTCATGCACCTGGCCTGTTCAAGTGCGTTATTCGGAGGAGGGACCAATCAGGAGCTGGCCATGCACTGCCTGTATGAGTGCAAGGGTGACATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053864:ENSDART00000157122:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PU(79.3=93.9)
A:
NA
C2:
PF0144819=ELM2=PD(19.0=31.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]