RnoINT0054399 @ rn6
Intron Retention
Gene
ENSRNOG00000010653 | Elmsan1
Description
ELM2 and Myb/SANT domain containing 1 [Source:RGD Symbol;Acc:1306119]
Coordinates
chr6:107643529-107643878:-
Coord C1 exon
chr6:107643736-107643878
Coord A exon
chr6:107643633-107643735
Coord C2 exon
chr6:107643529-107643632
Length
103 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AATGCTTCTGCTGAGTTCAGTGG
3' ss Score
0.34
Exon sequences
Seq C1 exon
ACGAATCAACGTCGGCACCCGGTTCCAAGCAGAAATCCCCACAATGAGAGACAGATCCCTGGCAGCCGCAGACCCCCATAAGGCTGACTTGGTGTGGCAGCCTTGGGAACATCTTGAGAGCAGCTGGGAGAAGCAGAGGCAAG
Seq A exon
GTAAGGAGAGATCTCCGGGGAGCAGGGCACGGCAGGCTGGTGGGCAGATGGACCCAGGCCTGAACATGATTTCCTGTTCCCCCAATGCTTCTGCTGAGTTCAG
Seq C2 exon
TGGATGACCTGCTGACGGCCGCCTGTTCAAGTATTTTCCCTGGTGCCGGCACCAACCAGGAACTGGCCCTACACTATCTGCATGAGTCCCGGGGGGACATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010653:ENSRNOT00000014158:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PU(79.3=93.9)
A:
NA
C2:
PF0144819=ELM2=PD(19.0=31.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAATCAACGTCGGCACC
R:
CCCGGGACTCATGCAGATAGT
Band lengths:
236-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]