HsaINT0020750 @ hg19
Intron Retention
Gene
ENSG00000156030 | C14orf43
Description
chromosome 14 open reading frame 43 [Source:HGNC Symbol;Acc:19853]
Coordinates
chr14:74193307-74193675:-
Coord C1 exon
chr14:74193533-74193675
Coord A exon
chr14:74193411-74193532
Coord C2 exon
chr14:74193307-74193410
Length
122 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCATGCTCCTGTGGATCCAGTGG
3' ss Score
3.73
Exon sequences
Seq C1 exon
ACGGATCAACGTGGGCTCCCGGTTCCAGGCAGAAATCCCCTTGATGAGGGACCGTGCCCTGGCAGCTGCAGATCCCCACAAGGCTGACTTGGTGTGGCAGCCATGGGAGGACCTAGAGAGCAGCCGGGAGAAGCAGAGGCAAG
Seq A exon
GTGAGGAGGGGCCTGGGGGCAGCAAGTGAGGGCAGGCACATGGGTGGGCCAGGCCTCACCCTGCCCAGCCCCGCCCTGAACGTGGTTTCCTCCCCTCCCTCCTCATGCTCCTGTGGATCCAG
Seq C2 exon
TGGAAGACCTGCTGACAGCCGCCTGCTCCAGCATTTTCCCTGGTGCTGGCACCAACCAGGAGCTGGCCCTGCACTGTCTGCACGAATCCAGAGGAGACATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156030-C14orf43:NM_001043318:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PU(79.3=93.9)
A:
NA
C2:
PF0144819=ELM2=PD(19.0=31.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATCAACGTGGGCTCC
R:
TGTCTCCTCTGGATTCGTGCA
Band lengths:
242-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)