BtaINT0056609 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016198 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112833317-112834116:+
Coord C1 exon
chr5:112833317-112833410
Coord A exon
chr5:112833411-112833978
Coord C2 exon
chr5:112833979-112834116
Length
568 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TGTTTCACTCCTTCTTAAAGCCC
3' ss Score
6.71
Exon sequences
Seq C1 exon
GTGCTAGTCCTATGGGAGTAAATGGAGGTGTAGGGGTTCAACCGTCGAATCTTCTTTCTGACTCGATGTTGCATTCAGCCATAAATTCTCAAAA
Seq A exon
GTAAGTTTTAATCTTGGCTTGTGCCCTTTGTCAGATTTCAGACTCTTGTTAGAGCTCCTTATTTGAGCTTTTTAAGTTTACTTGATTTGACAATATCCTTGGTGAATGATGACAAATTATGTGTTTTCTTTAGGCTCTGTATAACCTCTTTAGAAATTATATCAAGTATTTGGGGTAACTGACACCTGTACAAATACAGTAGGAAGTTAACAAATGCAGCTGCTTAAAAAGCGAGTTTGCTTTATCCCAATGCTAGCAGTTAGTCCATCGCCCAGTGGATTCTTGGGTAAGCTGTGTCAAAATGACAGCTCAGTCTTGTAACACAAGACTCAGTCTTTTAAACACAAGGTTATCAGCCACCCCTCTACACAGTGAAATGTTGTGTGTTTTAATTGTTTCCCCTCACAAGTACAAATACATATATACCATTTCCCCCAGATTTATGTGTAAATAGACTTGTCATAGTGTATTGGCCCTATTGCAGTCATCACTGTTAGCTCTACTTAAATTGAGAGCCTCTTTTTCCTACTACCCTTCTTTGCTAAAACTGTTTCACTCCTTCTTAAAG
Seq C2 exon
CCCAATGATGAGTGACAATGGCAGTGTGGCCTCTCTGGGTCCTATGCCAACAGCAGCTCAACCATCCAGTACTGGAATTCGGAAGCAATGGCATGAAGATATTACTCAGGATCTTCGAAATCATCTTGTCCACAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198:ENSBTAT00000021556:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.894
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0217211=KIX=PU(25.9=44.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAGTCCTATGGGAGTAAATGGA
R:
AGTTTGTGGACAAGATGATTTCGA
Band lengths:
231-799
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]