GgaINT0114266 @ galGal3
Intron Retention
Gene
ENSGALG00000011992 | EP300
Description
NA
Coordinates
chr1:51693589-51694556:-
Coord C1 exon
chr1:51694463-51694556
Coord A exon
chr1:51693724-51694462
Coord C2 exon
chr1:51693589-51693723
Length
739 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTCTTACTCTGTTTTTGAAGCTC
3' ss Score
7.23
Exon sequences
Seq C1 exon
GTGCAAATCCAATGGGAGTAAATGGAGGAGTAGGAGTTCAAACCCCCAGTCTGCTGCCTGACTCAATGTTACATTCAACCATGAATTCCCAAAA
Seq A exon
GTAAGTTGACTAACTCATTGCAACCCAGTGATTTGATTCAGCTACAAATGCTGATGATTGCTCGTAACAAATGAGATGAAGAAGGTGTATGTAAGCACACAAGATCCTTATATTTGAGAGTGTCAGAGCCGATCATAGCTGCTAAGGACAGTTGGAAAAGAAGCCTGGTAGTTGCTATGTCTTCATTTTTATCCTTTCTAGATATGTGTGTCCATTTTAACTTTTGCACTAAGTGATTGCAAACTGATTTTGTTAGGCCTCAGAGGCTACAAATGATATCTGGATTAGTAACTGGGCAGACCTGAAGCACCCACCGGTGCATTTACTGATGGGGATGGCATACCACAAGTCTGCTGTTGGTCTGCGATGGGACTAAGGGGCAACTTATTCACTGAGGTGTGAATGTGATCCTTGTGCTTAATAGTCTCGTGGCACTTTTTGCATAAACAGTGAGATAAATTCCATTGATTGTTATCTGTCCCTCTGGATTTTGTAGCTTTTGTTCCAGTTTTCAAAATCCTTGGATAGCACAGCTTGTACTCTTTTACAGCCCTCTTTAATCCTGGGAGGGATGCGTTGTTTTGGTGTCTGTGCTGCTATTTCTGCACAGTTTGTCCATTGATTAGGGAATGGCTGAACTAGCACTTTGTAATAACATTATTCTAAAAGAGGCTCTGACTGTAAGATCACTAAGCTTGGTCTGGACTTCCATCTTCAAATTCTTACTCTGTTTTTGAAG
Seq C2 exon
CTCCATGATGAGTGAAAGCGCCAATGTTGCTAGTCTGGGGGCTATGCCAACAGCTCAGCCATCCAATACAGGAATTCGAAAGCAGTGGCATGAAGATATTACTCAGGATCTTCGAAATCATCTTGTTCATAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992:ENSGALT00000019563:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0217211=KIX=PU(25.9=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAATGGGAGTAAATGGAGGAGT
R:
TGAACAAGATGATTTCGAAGATCCTG
Band lengths:
216-955
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]