MmuINT0057785 @ mm10
Intron Retention
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81616032-81616863:+
Coord C1 exon
chr15:81616032-81616125
Coord A exon
chr15:81616126-81616725
Coord C2 exon
chr15:81616726-81616863
Length
600 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTTTTCTTCGATTTCTAAAGCCC
3' ss Score
6.25
Exon sequences
Seq C1 exon
GTGCTAGTCCTATGGGTGTAAATGGAGGTGTTGGGGTTCAGACGCCAAATCTTCTTTCTGACTCCATGTTGCATTCAACTATAAATTCTCAAAA
Seq A exon
GTAAGTTGTGCCCTGAGTCCCTTCAAATTCTTAAGAATTTCTTCTTTTATTTAGATTTCTTAATTTGCAGGTAGCTTTAAGGAAAGGAATGAGCAGGATGTCCATGTGTATGTATGTATGTATATACACACATATATACTTGACATGTGAGTCACAGACTTGGTTTAATCTATACCCCACAGGTACAGAAGCAGGGAGTTGCAGTGTTGCACCTAGATCTAGTGCATTCTTTAGAGATGGATATCATCAGAATGTATTGTGCACATGTATGAGGTTTTCAAAAATTATGTTTCTCCTAATGTGCTTTTCAGTTATTGCTTAATGGCTTTTGTGAAAGTTAACCATGTGTCTACATGGCAACACAGCCTAGTGACATGACTTGGGTTTTTAAATAAAGAATTCACTCTCATCCTTCATAAGGAAATGTAACACTTTTCTTTATTGAAGTATGTACACACACGCAAAACGTGTAGTCTCATACACTTGCCCCTTAAATAGACTCAGTCACCATTCATCAAAGTAATTACTGTTAGCTCTAATTAAGTGAAGTCTGTCTCCAATACTTATTCACTAAACCTACTTTTTCTTCGATTTCTAAAG
Seq C2 exon
CCCAATGATGAGTGAAAATGCTGGTGTGGCCTCCCTGGGTCCTTTGCCAACAGCAGCTCAGCCATCTAGTACTGGAATTCGAAAACAGTGGCATGAAGATATTACTCAGGATCTTCGAAACCACCTTGTTCATAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024:ENSMUST00000068387:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=NA C2=0.894
Domain overlap (PFAM):
C1:
PF0217211=KIX=PU(11.6=25.0)
A:
NA
C2:
PF0217211=KIX=PU(25.9=44.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTAGTCCTATGGGTGTAAATGG
R:
AGTTTATGAACAAGGTGGTTTCGA
Band lengths:
232-832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types