DreINT0063381 @ danRer10
Intron Retention
Gene
ENSDARG00000061108 | ep300b
Description
E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
Coordinates
chr3:24905751-24906069:-
Coord C1 exon
chr3:24905964-24906069
Coord A exon
chr3:24905883-24905963
Coord C2 exon
chr3:24905751-24905882
Length
81 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTG
5' ss Score
7.44
3' ss Seq
GGTTTGTCTGTGTCTTGTAGCTT
3' ss Score
7.49
Exon sequences
Seq C1 exon
GTGGGAACTCAATGGGAGTGAATGGAGGAGTCGGTGCGCCGATGTCAAACCAGCATCCAGGAATGCTGCCCGATGGCATGCTGCACAGGAACATGACCGCTCAGAG
Seq A exon
GTATTGAACATCACTGGTTTAAAAACTTTTGGTTAGTAGCTGCTTCACATCGATGTCTGACGGTTTGTCTGTGTCTTGTAG
Seq C2 exon
CTTGATGAATGACAGCTCTGGTGTTGGTAACATGGGCTCTGCTGCGACCGCTACACCGCCCTCTGCTGGAATGAGGAAGAGCTGGCATGAAGACATCACACAGGACCTCCGCAATCACCTTGTACACAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061108:ENSDART00000156459:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0217211=KIX=PU(25.9=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGTGAATGGAGGAGTCG
R:
CCAGCTCTTCCTCATTCCAGC
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]