RnoINT0006541 @ rn6
Intron Retention
Gene
ENSRNOG00000000190 | AABR07058539.1
Description
NA
Coordinates
chr7:122852256-122853033:+
Coord C1 exon
chr7:122852256-122852349
Coord A exon
chr7:122852350-122852895
Coord C2 exon
chr7:122852896-122853033
Length
546 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TTTTCCCTTTATTTTTCAAGCCC
3' ss Score
6.93
Exon sequences
Seq C1 exon
GTGCCAGTCCTATGGGTGTAAATGGAGGTGTAGGGGTTCAGACACCGAATCTTCTTTCTGACTCCATGTTGCATTCAACCATAAATTCTCAGAA
Seq A exon
GTAAGTTTGTACCTCGAGTCCCTTCAGATTTTCTTAGTTTAGAGGTAGGAATAAGCAGTATGTCCATGTATATAGCCTTACTTGACATTTTTTTTTCTTTTTTTTTGTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCTAACCCCCTTACTTGACATTTGAGTCACGGACTCAATAACTTGGGTTAATCTATAGCCTCCAAAGAAACAGGGTGCAGTGCATTCTTCAATGATGGGTATCATCAGAGTGTACTGTGCACAAGTATCAGGTTTTCAAAGAGGATGTTTCCTTTAATGTTATTTTCAGTTATTGCTTAATGACTTTTGTAAAAGTTAATGTGAGTCCACATGAAGTACACACACACAAACAATGTGTAGTCTCATACACATGCCCCTTAAATAGATTCAGTCATCATTCATGGCAGCAATTACTGATAGCTCAAATTAAGTGAAGTCTGTCTTCAATACTTTTTCACTAATACTATTTTTTTTTTCCCTTTATTTTTCAAG
Seq C2 exon
CCCAATGATGAATGAAAATGCCAGTGTGGCCTCTCTGGGTCCTTTGCCCACAGCAGCCCAGCCATCTAGTACTGGAATTCGAAAACAGTGGCATGAAGATATTACTCAGGATCTTCGAAACCACCTTGTTCATAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000190:ENSRNOT00000000206:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.894
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0217211=KIX=PU(25.9=44.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAGTCCTATGGGTGTAA
R:
AGTTTATGAACAAGGTGGTTTCGA
Band lengths:
232-778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]